A method for validation for clustering of phenotypic gene knockdown profiles using protein-protein interactions information. - Nikolay Samusik; Yannis Kalaidzidis; Marino Zerial (BMC Bioinform., 2009)

Session Introduction. - Nikolay Samusik; Nima Aghaeepour; Sean Bendall (PSB, 2017)

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks. - Ye Henry Li; Dangna Li; Nikolay Samusik; Xiaowei Wang; Leying Guan; Garry P. Nolan; Wing Hung Wong (PLoS Comput. Biol., 2017)

GateFinder: projection-based gating strategy optimization for flow and mass cytometry. - Nima Aghaeepour; Erin F. Simonds; David J. H. F. Knapp; Robert V. Bruggner; Karen Sachs; Anthony Culos; Pier Federico Gherardini; Nikolay Samusik; Gabriela K. Fragiadakis; Sean Bendall; Brice Gaudilliere; Martin S. Angst; et al. (Bioinform., 2018)