CoGenT++: an extensive and extensible data environment for computational genomics. - Leon Goldovsky; Paul J. Janssen; Dag G. Ahrén; Benjamin Audit; Ildefonso Cases; Nikos Darzentas; Anton J. Enright; Núria López-Bigas; José M. Peregrín-Alvarez; Mike Smith 001; Sophia Tsoka; Victor Kunin; et al. (Bioinform., 2005)

PuReD-MCL: a graph-based PubMed document clustering methodology. - Theodosios Theodosiou; Nikos Darzentas; Lefteris Angelis; Christos A. Ouzounis (Bioinform., 2008)

Circoletto: visualizing sequence similarity with Circos. - Nikos Darzentas (Bioinform., 2010)

MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences. - Nikos Darzentas; Alexandros Bousios; V. Apostolidou; Athanasios Tsaftaris (Bioinform., 2010)

MeSHy: Mining unanticipated PubMed information using frequencies of occurrences and concurrences of MeSH terms. - Theodosios Theodosiou; Ioannis S. Vizirianakis; Lefteris Angelis; Athanasios Tsaftaris; Nikos Darzentas (J. Biomed. Informatics, 2011)

ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy. - Vojtech Bystrý; Andreas Agathangelidis; Vasilis Bikos; Lesley Ann Sutton; Panagiotis Baliakas; Anastasia Hadzidimitriou; Kostas Stamatopoulos; Nikos Darzentas (Bioinform., 2015)

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data. - Vojtech Bystrý; Tomas Reigl; Adam Krejci; Martin Demko; Barbora Hanakova; Andrea Grioni; Henrik Knecht; Max Schlitt; Peter Dreger; Leopold Sellner; Dietrich Herrmann; Marine Pingeon; et al. (Bioinform., 2017)

GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. - Karol Pal; Vojtech Bystrý; Tomas Reigl; Martin Demko; Adam Krejci; Tasoula Touloumenidou; Evangelia Stalika; Boris Tichy; Paolo Ghia; Kostas Stamatopoulos; Sarka Pospisilova; Jitka Malcikova; et al. (Bioinform., 2017)