Characterizing uncertainty in predictions of genomic sequence-to-activity models. - Ayesha Bajwa; Ruchir Rastogi; Pooja Kathail; Richard W. Shuai; Nilah Ioannidis (MLCB, 2023)

GUANinE v1.0: Benchmark Datasets for Genomic AI Sequence-to-Function Models. - Eyes S. Robson; Nilah Ioannidis (MLCB, 2023)

Designing Cell-Type-Specific Promoter Sequences Using Conservative Model-Based Optimization. - Aniketh Janardhan Reddy; Xinyang Geng; Michael Herschl; Sathvik Kolli; Aviral Kumar; Patrick Hsu; Sergey Levine; Nilah Ioannidis (NeurIPS, 2024)