ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. - Nils Hoffmann; Jens Stoye (Bioinform., 2009)

PI Control, PI-Based State Space Control, and Model-Based Predictive Control for Drive Systems With Elastically Coupled Loads - A Comparative Study. - Sönke Thomsen; Nils Hoffmann; Friedrich Wilhelm Fuchs (IEEE Trans. Ind. Electron., 2011)

Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. - Nils Hoffmann; Matthias Keck; Heiko Neuweger; Mathias Wilhelm 001; Petra Högy; Karsten Niehaus; Jens Stoye (BMC Bioinform., 2012)

StatCom control at wind farms with fixed-speed induction generators under asymmetrical grid faults. - Christian Wessels; Nils Hoffmann; Marta Molinas; Friedrich Wilhelm Fuchs (IEEE Trans. Ind. Electron., 2013)

BiPACE 2D - graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry. - Nils Hoffmann; Mathias Wilhelm 001; Anja Doebbe; Karsten Niehaus; Jens Stoye (Bioinform., 2014)

Computational methods for high-throughput metabolomics - Nils Hoffmann (2014)

Design of a grid adaptive controller for PWM converters with LCL filters. - Markus Andresen; Marco Liserre; Friedrich Wilhelm Fuchs; Nils Hoffmann (IECON, 2015)

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. - Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn A. Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey; Uwe Scholz; Malvika Sharan; et al. (F1000Research, 2019)

Cyber Security vs. Digital Innovation: A Trade-off for Logistics Companies? - Sebastian Heierhoff; Nils Hoffmann (HICSS, 2022)

Training-free hyperparameter optimization of neural networks for electronic structures in matter. - Lenz Fiedler; Nils Hoffmann; Parvez Mohammed; Gabriel A. Popoola; Tamar Yovell; Vladyslav Oles; J. Austin Ellis; Sivasankaran Rajamanickam; Attila Cangi (Mach. Learn. Sci. Technol., 2022)

Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. - Nils Hoffmann; Irena Maus; Sebastian Beier; Peter Belmann; Jan Krüger; Andreas Tauch; Alexander Goesmann; Roland Eils; Peer Bork; Oliver Kohlbacher; Ursula Kummer; Rolf Backofen; et al. (CoRDI, 2023)

A Low Overhead Approach for Automatically Tracking Provenance in Machine Learning Workflows. - Nils Hoffmann; Neda Ebrahimi Pour (EuroS&P Workshops, 2024)

SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python. - Marilyn De Graeve; Wout Bittremieux; Thomas Naake; Carolin Huber; Matthias Anagho-Mattanovich; Nils Hoffmann; Pierre Marchal; Victor Chrone; Philippine Louail; Helge Hecht; Michael Witting; Johannes Rainer (J. Open Source Softw., 2025)