Analysis Software for High-density Pooled Genotyping Data. - Waibhav Tembe; Nils Homer; Sotiris Mitropanopoulos; Mitchell Storey; Szabolcs Szelinger; Marcel Brun; Matthew J. Huentelman; Edward Suh; Dietrich A. Stephan; James Lowey; John V. Pearson; David W. Craig (BIOCOMP, 2007)

Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studies. - Nils Homer; Waibhav Tembe; Szabolcs Szelinger; Margot Redman; Dietrich A. Stephan; John V. Pearson; Stanley F. Nelson; David W. Craig (Bioinform., 2008)

The Sequence Alignment/Map format and SAMtools. - Heng Li 002; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor T. Marth; Gonçalo R. Abecasis; Richard Durbin (Bioinform., 2009)

Local alignment of two-base encoded DNA sequence. - Nils Homer; Barry Merriman; Stanley F. Nelson (BMC Bioinform., 2009)

Statistical Comparison Framework and Visualization Scheme for Ranking-Based Algorithms in High-Throughput Genome-Wide Studies. - Waibhav Tembe; John V. Pearson; Nils Homer; James Lowey; Edward Suh; David W. Craig (J. Comput. Biol., 2009)

A survey of sequence alignment algorithms for next-generation sequencing. - Heng Li 002; Nils Homer (Briefings Bioinform., 2010)

Local alignment of generalized k-base encoded DNA sequence. - Nils Homer; Stanley F. Nelson; Barry Merriman (BMC Bioinform., 2010)