High-Level Process Control in Eden. - Jost Berthold; Ulrike Klusik; Rita Loogen; Steffen Priebe; Nils Weskamp (Euro-Par, 2003)

Efficient Similarity Search in Protein Structure Databases: Improving Cliqae-Detection through Clique Hashing. - Nils Weskamp; Daniel Kuhn; Eyke Hüllermeier; Gerhard Klebe (German Conference on Bioinformatics, 2003)

Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites. - Nils Weskamp; Eyke Hüllermeier; Daniel Kuhn; Gerhard Klebe (German Conference on Bioinformatics, 2004)

Efficient similarity search in protein structure databases by k-clique hashing. - Nils Weskamp; Daniel Kuhn; Eyke Hüllermeier; Gerhard Klebe (Bioinform., 2004)

Clustering of gene expression data using a local shape-based similarity measure. - Rajarajeswari Balasubramaniyan; Eyke Hüllermeier; Nils Weskamp; Jörg Kämper (Bioinform., 2005)

Effiziente Algorithmen zur Musterentdeckung in strukturierten Objekten mit Anwendungen im strukturbasierten Wirkstoffdesign (Efficient Algorithms for Robust Pattern Mining on Structured Objects with Applications to Structure-Based Drug Design) - Nils Weskamp (2006)

Graph Alignment: Fuzzy Pattern Mining for the Structural Analysis of Protein Active Sites. - Eyke Hüllermeier; Nils Weskamp; Gerhard Klebe; Daniel Kuhn (FUZZ-IEEE, 2007)

Multiple Graph Alignment for the Structural Analysis of Protein Active Sites. - Nils Weskamp; Eyke Hüllermeier; Daniel Kuhn; Gerhard Klebe (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

SAR Matrices: Automated Extraction of Information-Rich SAR Tables from Large Compound Data Sets. - Anne Mai Wassermann; Peter Haebel; Nils Weskamp; Jürgen Bajorath (J. Chem. Inf. Model., 2012)

Matched Peptides: Tuning Matched Molecular Pair Analysis for Biopharmaceutical Applications. - Julian E. Fuchs; Bernd Wellenzohn; Nils Weskamp; Klaus R. Liedl (J. Chem. Inf. Model., 2015)

Coloring Molecules with Explainable Artificial Intelligence for Preclinical Relevance Assessment. - José Jiménez-Luna; Miha Skalic; Nils Weskamp; Gisbert Schneider (J. Chem. Inf. Model., 2021)

Benchmarking Molecular Feature Attribution Methods with Activity Cliffs. - José Jiménez-Luna; Miha Skalic; Nils Weskamp (J. Chem. Inf. Model., 2022)