Resource constrained flux balance analysis predicts selective pressure on the global structure of metabolic networks. - Nima Abedpour; Markus Kollmann (BMC Syst. Biol., 2015)

Predicting gene expression level in E. coli from mRNA sequence information. - Linlin Zhao; Nima Abedpour; Christopher Blum; Petra Kolkhof; Mathias Beller; Markus Kollmann; Emidio Capriotti (CIBCB, 2019)