Augmenting DNABERT Embeddings with Multimodal DNA Features for Improved Regulatory Sequence Interpretation. - Nimisha Papineni; Pratik Dutta; Max Chao; Orbin Acanto; Rekha Sathian; Pallavi Surana; Ramana V. Davuluri (MLCB, 2025)

DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome. - Pratik Dutta; Matthew Obusan; Rekha Sathian; Max Chao; Pallavi Surana; Nimisha Papineni; Yanrong Ji; Zhihan Zhou 001; Han Liu 001; Alisa Yurovsky; Ramana V. Davuluri (CoRR, 2025)