The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. - Nina Luhmann; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (ISBRA, 2016)

The SCJ small parsimony problem for weighted gene adjacencies (Extended version). - Nina Luhmann; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (CoRR, 2016)

Phylogenetic assembly of paleogenomes integrating ancient DNA data - Nina Luhmann (2017)

Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes. - Zhemin Zhou; Nina Luhmann; Nabil-Fareed Alikhan; Christopher Quince; Mark Achtman (RECOMB, 2018)

Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. - Nina Luhmann; Cédric Chauve; Jens Stoye; Roland Wittler (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. - Nina Luhmann; Manuel Lafond; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)