A Contradiction-Based Framework for Testing Gene Regulation Hypotheses. - Steve Racunas; Nigam Shah; Nina V. Fedoroff (CSB, 2003)

A tool-kit for cDNA microarray and promoter analysis. - N. H. Shah 001; D. C. King; P. N. Shah; Nina V. Fedoroff (Bioinform., 2003)

HyBrow: a prototype system for computer-aided hypothesis evaluation. - Stephen A. Racunas; N. H. Shah 001; István Albert; Nina V. Fedoroff (ISMB/ECCB (Supplement of Bioinformatics), 2004)

CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology. - N. H. Shah 001; Nina V. Fedoroff (Bioinform., 2004)

A case study in pathway knowledgebase verification. - Stephen A. Racunas; Nigam Shah; Nina V. Fedoroff (BMC Bioinform., 2006)