EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. - Ning Leng; John A. Dawson; James A. Thomson; Victor Ruotti; Anna I. Rissman; Bart M. G. Smits; Jill D. Haag; Michael N. Gould; Ron M. Stewart; Christina Kendziorski (Bioinform., 2013)

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema. - Ron M. Stewart; Cynthia Alexander Rascón; Shulan Tian; Jeff Nie; Chris Barry; Li-Fang Chu; Hamisha Ardalani; Ryan J. Wagner; Mitchell D. Probasco; Jennifer M. Bolin; Ning Leng; Srikumar Sengupta; et al. (PLoS Comput. Biol., 2013)

A vehicle-based measurement framework for enhancing whitespace spectrum databases. - Tan Zhang; Ning Leng; Suman Banerjee 001 (MobiCom, 2014)

A Wireless Spectrum Analyzer in Your Pocket. - Tan Zhang; Ashish Patro; Ning Leng; Suman Banerjee 001 (HotMobile, 2015)

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. - Ning Leng; Yuan Li; Brian E. McIntosh; Bao Kim Nguyen; Bret Duffin; Shulan Tian; James A. Thomson; Colin N. Dewey; Ron M. Stewart; Christina Kendziorski (Bioinform., 2015)

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data. - Ning Leng; Jeea Choi; Li-Fang Chu; James A. Thomson; Christina Kendziorski; Ron M. Stewart (Bioinform., 2016)

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. - Chris Barry; Matthew T. Schmitz; Cara Argus; Jennifer M. Bolin; Mitchell D. Probasco; Ning Leng; Bret Duffin; John W. Steill; Scott Swanson; Brian E. McIntosh; Ron M. Stewart; Christina Kendziorski; et al. (PLoS Comput. Biol., 2019)

The Future will be Different than Today: Model Evaluation Considerations when Developing Translational Clinical Biomarker. - Yichen Lu; Jane Fridlyand; Tiffany Tang; Ting Qi; Noah Simon; Ning Leng (CoRR, 2021)