vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis. - Ahmed Mohamed 002; Dharmesh D. Bhuva; Sam Lee; Ning Liu 028; Chin Wee Tan; Melissa J. Davis (Nucleic Acids Res., 2023)

vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. - Dharmesh D. Bhuva; Chin Wee Tan; Ning Liu 028; Holly J. Whitfield; Nicholas Papachristos; Samuel C. Lee; Malvika Kharbanda; Ahmed Mohamed 002; Melissa J. Davis (BMC Bioinform., 2024)

DOMINO tutorial: intorduction to domains identification in spatial transcriptomics data. - Ning Liu 028 (Zenodo, 2025)

DOMINO: diffusion-optimised graph learning identifies domain structures with enhanced accuracy and scalability. - Ning Liu 028 (Zenodo, 2025)

Graph-based RNA structural representation reveals determinants of subcellular localization. - Yi Hao; Heyun Sun; Zixu Ran; Xudong Guo; Ming Liu; Yue Bi; Jose Polo; Ning Liu 028; Fuyi Li (Briefings Bioinform., 2026)