Enhancing Gene Cluster Identification and Classification in Bacterial Genomes Through Synonym Replacement and Deep Learning. - Zhihua Du; Ningyu Zhong; Jianqiang Li 001 (BIBM, 2024)

ProtPhage: a deep learning framework for phage viral protein identification and functional annotation. - Yuehua Ou; Qiyi Chen; Ningyu Zhong; Zhihua Du (Briefings Bioinform., 2025)

NASNet-DTI: accurate drug-target interaction prediction using heterogeneous graphs and node adaptation. - Ningyu Zhong; Zhihua Du (Briefings Bioinform., 2025)