An Algorithmic Framework for Predicting Side Effects of Drugs. - Nir Atias; Roded Sharan (J. Comput. Biol., 2011)

Combining Drug and Gene Similarity Measures for Drug-Target Elucidation. - Liat Perlman; Assaf Gottlieb; Nir Atias; Eytan Ruppin; Roded Sharan (J. Comput. Biol., 2011)

Comparative analysis of protein networks: hard problems, practical solutions. - Nir Atias; Roded Sharan (Commun. ACM, 2012)

Experimental design schemes for learning Boolean network models. - Nir Atias; Michal Gershenzon; Katia Labazin; Roded Sharan (Bioinform., 2014)

ANAT 2.0: reconstructing functional protein subnetworks. - Yomtov Almozlino; Nir Atias; Dana Silverbush; Roded Sharan (BMC Bioinform., 2017)