Deriving physical connectivity from neuronal morphology. - Nir Kalisman; Gilad Silberberg; Henry Markram (Biol. Cybern., 2003)

MESHI: a new library of Java classes for molecular modeling. - Nir Kalisman; Ami Levi; Tetyana Maximova; Dan Reshef; Sharon Zafriri-Lynn; Yan Gleyzer; Chen Keasar (Bioinform., 2005)

Insights into the Intra-Ring Subunit Order of TriC/CCT: Structural and Evolutionary Analysis. - Nir Kalisman; Michael Levitt 001 (Pacific Symposium on Biocomputing, 2010)