Pathway-Based Feature Selection Algorithm for Cancer Microarray Data. - Nirmalya Bandyopadhyay; Tamer Kahveci; Steve Goodison; Yijun Sun; Sanjay Ranka (Adv. Bioinformatics, 2009)

Inferring progression models for CGH data. - Jun Liu; Nirmalya Bandyopadhyay; Sanjay Ranka; Michael Baudis; Tamer Kahveci (Bioinform., 2009)

RepFrag: a graph based method for finding repeats and transposons from fragmented genomes. - Nirmalya Bandyopadhyay; A. Mark Settles; Tamer Kahveci (BCB, 2010)

GBA Manager: An Online Tool for Querying Low-Complexity Regions in Proteins. - Nirmalya Bandyopadhyay; Tamer Kahveci (J. Comput. Biol., 2010)

Identifying differentially regulated genes. - Nirmalya Bandyopadhyay; Manas Somaiya; Sanjay Ranka; Tamer Kahveci (ICCABS, 2011)

SSLPred : Predicting Synthetic Sickness Lethality. - Nirmalya Bandyopadhyay; Sanjay Ranka; Tamer Kahveci (Pacific Symposium on Biocomputing, 2012)

HIDEN: Hierarchical decomposition of regulatory networks. - Günhan Gülsoy; Nirmalya Bandyopadhyay; Tamer Kahveci (BMC Bioinform., 2012)