Improved enzyme annotation with EC-specific cutoffs using DETECT v2. - Nirvana Nursimulu; Leon L. Xu; James D. Wasmuth; Ivan Krukov; John Parkinson (Bioinform., 2018)

Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation. - Nirvana Nursimulu; Alan M. Moses; John Parkinson (PLoS Comput. Biol., 2022)

Towards Automated Metabolic Model Reconstruction with Application to Parasite Evolution - Nirvana Nursimulu (2023)