Unsupervised Feature Clustering Improves Contrastive Representation Learning for Medical Image Segmentation. - Yejia Zhang; Xinrong Hu; Nishchal Sapkota; Yiyu Shi 001; Danny Z. Chen (BIBM, 2022)

Keep Your Friends Close & Enemies Farther: Debiasing Contrastive Learning with Spatial Priors in 3D Radiology Images. - Yejia Zhang; Nishchal Sapkota; Pengfei Gu; Yaopeng Peng; Hao Zheng 006; Danny Z. Chen (BIBM, 2022)

A Point in the Right Direction: Vector Prediction for Spatially-Aware Self-Supervised Volumetric Representation Learning. - Yejia Zhang; Pengfei Gu; Nishchal Sapkota; Hao Zheng 006; Peixian Liang; Danny Z. Chen (ISBI, 2023)

SwIPE: Efficient and Robust Medical Image Segmentation with Implicit Patch Embeddings. - Yejia Zhang; Pengfei Gu; Nishchal Sapkota; Danny Z. Chen (MICCAI (5), 2023)

Boosting Medical Image Classification with Segmentation Foundation Model. - Pengfei Gu; Zihan Zhao; Hongxiao Wang; Yaopeng Peng; Yizhe Zhang 001; Nishchal Sapkota; Chaoli Wang 001; Danny Z. Chen (ISBI, 2024)

Shmc-Net: A Mask-Guided Feature Fusion Network for Sperm Head Morphology Classification. - Nishchal Sapkota; Yejia Zhang; Sirui Li; Peixian Liang; Zhuo Zhao; Jingjing Zhang; Xiaomin Zha; Yiru Zhou; Yunxia Cao; Danny Z. Chen (ISBI, 2024)

Conunetr: A Conditional Transformer Network for 3D Micro-Ct Embryonic Cartilage Segmentation. - Nishchal Sapkota; Yejia Zhang; Susan M. Motch Perrine; Yuhan Hsi; Sirui Li; Meng Wu; Greg Holmes; Abdul R. Abdulai; Ethylin W. Jabs; Joan T. Richtsmeier; Danny Z. Chen (ISBI, 2024)

Path-Gptomic: A Balanced Multi-Modal Learning Framework For Survival Outcome Prediction. - Hongxiao Wang; Yang Yang; Zhuo Zhao; Pengfei Gu; Nishchal Sapkota; Danny Z. Chen (ISBI, 2024)

IHCSurv: Effective Immunohistochemistry Priors for Cancer Survival Analysis in Gigapixel Multi-stain Whole Slide Images. - Yejia Zhang; Hanqing Chao; Zhongwei Qiu; Wenbin Liu; Yixuan Shen; Nishchal Sapkota; Pengfei Gu; Danny Z. Chen; Le Lu 001; Ke Yan 006; Dakai Jin; Yun Bian; et al. (MICCAI (4), 2024)

UniCoN: Universal Conditional Networks for Multi-Age Embryonic Cartilage Segmentation with Sparsely Annotated Data. - Nishchal Sapkota; Yejia Zhang; Zihao Zhao; Maria Gomez; Yuhan Hsi; Jordan A. Wilson; Kazuhiko Kawasaki; Greg Holmes; Meng Wu; Ethylin W. Jabs; Joan T. Richtsmeier; Susan M. Motch Perrine; et al. (CoRR, 2024)