Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space. - Nivedita Dutta; Joanna Sarzynska; Ansuman Lahiri (J. Chem. Inf. Model., 2020)

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives. - Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri (J. Comput. Aided Mol. Des., 2022)

Dental Restorative Material Ontology (DrMO). - Nivedita Dutta; Michael DeBellis (FOIS, 2023)

An Ontological Representation of Oral Dysbiosis. - Gopikrishnan Mannamparambil Chandrasekharan; Alexander D. Diehl; Nivedita Dutta; William D. Duncan (ICBO, 2024)

Integrating Ontologies and Large Language Models to Implement Retrieval Augmented Generation. - Michael DeBellis; Nivedita Dutta; Jacob Gino; Aadarsh Balaji (Appl. Ontology, 2024)