Baculovirus Phylogeny Based on Genome Rearrangements. - Daniel B. Goodman; Noah Ollikainen; Chris Sholley (RECOMB-CG, 2007)

SAT-based protein design. - Noah Ollikainen; Ellen Sentovich; Carlos Coelho; Andreas Kuehlmann; Tanja Kortemme (ICCAD, 2009)

Computational Protein Design Quantifies Structural Constraints on Amino Acid Covariation. - Noah Ollikainen; Tanja Kortemme (PLoS Comput. Biol., 2013)

Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity. - Noah Ollikainen; René M. de Jong; Tanja Kortemme (PLoS Comput. Biol., 2015)