Reconstructing the Phylogeny of Mobile Elements. - Sean O'Rourke; Noah Zaitlen; Nebojsa Jojic; Eleazar Eskin (RECOMB, 2007)

Efficient Genome Wide Tagging by Reduction to SAT. - Arthur Choi; Noah Zaitlen; Buhm Han; Knot Pipatsrisawat; Adnan Darwiche; Eleazar Eskin (WABI, 2008)

Shift-Invariant Adaptive Double Threading: Learning MHC II-Peptide Binding. - Noah Zaitlen; Manuel Reyes-Gomez; David Heckerman; Nebojsa Jojic (J. Comput. Biol., 2008)

An Adaptive and Memory Efficient Algorithm for Genotype Imputation. - Hyun Min Kang; Noah Zaitlen; Buhm Han; Eleazar Eskin (RECOMB, 2009)

Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms. - Roberto Santana 001; Alexander Mendiburu; Noah Zaitlen; Eleazar Eskin; José Antonio Lozano 001 (Artif. Intell. Medicine, 2010)

EMINIM: An Adaptive and Memory-Efficient Algorithm for Genotype Imputation. - Hyun Min Kang; Noah Zaitlen; Eleazar Eskin (J. Comput. Biol., 2010)

Genotyping common and rare variation using overlapping pool sequencing. - Dan He 001; Noah Zaitlen; Bogdan Pasaniuc; Eleazar Eskin; Eran Halperin (BMC Bioinform., 2011)

Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. - Bogdan Pasaniuc; Noah Zaitlen; Eran Halperin (J. Comput. Biol., 2011)

Analysis of case-control association studies with known risk variants. - Noah Zaitlen; Bogdan Pasaniuc; Nick Patterson; Samuela Pollack; Benjamin Voight; Leif Groop; David Altshuler; Brian E. Henderson; Laurence N. Kolonel; Loic Le Marchand; Kevin Waters; Christopher A. Haiman; et al. (Bioinform., 2012)

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. - Bogdan Pasaniuc; Sriram Sankararaman; Dara G. Torgerson; Christopher Gignoux; Noah Zaitlen; Celeste Eng; William Rodriguez-Cintron; Rocio Chapela; Jean G. Ford; Pedro C. Avila; Jose Rodriguez-Santana; Gary K. Chen; et al. (Bioinform., 2013)

Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. - Bogdan Pasaniuc; Noah Zaitlen; Huwenbo Shi; Gaurav Bhatia; Alexander Gusev; Joseph Pickrell; Joel Hirschhorn; David P. Strachan; Nick Patterson; Alkes L. Price (Bioinform., 2014)

Adapt-Mix: learning local genetic correlation structure improves summary statistics-based analyses. - Danny S. Park; Brielin Brown; Celeste Eng; Scott Huntsman; Donglei Hu; Dara G. Torgerson; Esteban Gonzàlez Burchard; Noah Zaitlen (Bioinform., 2015)

Assessing allele-specific expression across multiple tissues from RNA-seq read data. - Matti Pirinen; Tuuli Lappalainen; Noah A. Zaitlen; Emmanouil T. Dermitzakis; Peter Donnelly; Mark I. McCarthy; Manuel A. Rivas (Bioinform., 2015)

PIGS: improved estimates of identity-by-descent probabilities by probabilistic IBD graph sampling. - Danny S. Park; Yael Baran; Farhad Hormozdiari; Celeste Eng; Dara G. Torgerson; Esteban Gonzàlez Burchard; Noah Zaitlen (BMC Bioinform., 2015)

PhAT-QTL: A Phase-Aware Test for QTL Detection. - Meena Subramaniam; Noah Zaitlen; Jimmie Ye (ISBRA, 2017)

GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. - Elior Rahmani; Reut Yedidim; Liat Shenhav; Regev Schweiger; Omer Weissbrod; Noah Zaitlen; Eran Halperin (Bioinform., 2017)

ROP: Dumpster Diving in RNA-sequencing to Find the Source of 1 Trillion Reads Across Diverse Adult Human Tissues. - Serghei Mangul; Harry (Taegyun) Yang; Noah Zaitlen (BCB, 2018)

Efficient Estimation and Applications of Cross-Validated Genetic Predictions. - Joel Mefford; Danny S. Park; Zhili Zheng; Arthur Ko; Mika Ala-Korpela; Markku Laakso; Paivi Pajukanta; Jian Yang 005; John S. Witte; Noah Zaitlen (RECOMB, 2019)

Estimating the Rate of Cell Type Degeneration from Epigenetic Sequencing of Cell-Free DNA. - Christa Caggiano; Barbara Celona; Fleur Garton; Joel Mefford; Brian Black; Catherine Lomen-Hoerth; Andrew Dahl; Noah Zaitlen (RECOMB, 2020)

Efficient Estimation and Applications of Cross-Validated Genetic Predictions to Polygenic Risk Scores and Linear Mixed Models. - Joel Mefford; Danny S. Park; Zhili Zheng; Arthur Ko; Mika Ala-Korpela; Markku Laakso; Päivi Pajukanta; Jian Yang 005; John S. Witte; Noah Zaitlen (J. Comput. Biol., 2020)

MANOCCA: a robust and computationally efficient test of covariance in high-dimension multivariate omics data. - Christophe Boetto; Arthur Frouin; Léo Henches; Antoine Auvergne; Yuka Suzuki; Etienne Patin; Marius Bredon; Alec Chiu; Milieu Interieur Consortium; Sriram Sankararaman; Noah Zaitlen; Sean P. Kennedy; et al. (Briefings Bioinform., 2024)