A Graphical Method for Parameter Learning of Symbolic-Statistical Models. - Yoshitaka Kameya; Nobuhisa Ueda; Taisuke Sato (Discovery Science, 1999)

Simplified Training Algorithms for Hierarchical Hidden Markov Models. - Nobuhisa Ueda; Taisuke Sato (Discovery Science, 2001)

Inferring strengths of protein-protein interactions from experimental data using linear programming. - Morihiro Hayashida; Nobuhisa Ueda; Tatsuya Akutsu (ECCB, 2003)

Extensions of marginalized graph kernels. - Pierre Mahé; Nobuhisa Ueda; Tatsuya Akutsu; Jean-Luc Perret; Jean-Philippe Vert (ICML, 2004)

Application of a new probabilistic model for recognizing complex patterns in glycans. - Kiyoko F. Aoki; Nobuhisa Ueda; Atsuko Yamaguchi; Minoru Kanehisa; Tatsuya Akutsu; Hiroshi Mamitsuka (ISMB/ECCB (Supplement of Bioinformatics), 2004)

A General Probabilistic Framework for Mining Labeled Ordered Trees. - Nobuhisa Ueda; Kiyoko F. Aoki; Hiroshi Mamitsuka (SDM, 2004)

Protein homology detection using string alignment kernels. - Hiroto Saigo; Jean-Philippe Vert; Nobuhisa Ueda; Tatsuya Akutsu (Bioinform., 2004)

Clustering under the line graph transformation: application to reaction network. - Jose C. Nacher; Nobuhisa Ueda; Takuji Yamada; Minoru Kanehisa; Tatsuya Akutsu (BMC Bioinform., 2004)

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. - Kiyoko F. Aoki; Atsuko Yamaguchi; Nobuhisa Ueda; Tatsuya Akutsu; Hiroshi Mamitsuka; Susumu Goto; Minoru Kanehisa (Nucleic Acids Res., 2004)

Managing and Analyzing Carbohydrate Data. - Kiyoko F. Aoki; Nobuhisa Ueda; Atsuko Yamaguchi; Tatsuya Akutsu; Minoru Kanehisa; Hiroshi Mamitsuka (SIGMOD Rec., 2004)

Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines. - Pierre Mahé; Nobuhisa Ueda; Tatsuya Akutsu; Jean-Luc Perret; Jean-Philippe Vert (J. Chem. Inf. Model., 2005)

A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains. - Nobuhisa Ueda; Kiyoko F. Aoki-Kinoshita; Atsuko Yamaguchi; Tatsuya Akutsu; Hiroshi Mamitsuka (IEEE Trans. Knowl. Data Eng., 2005)

ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. - Kiyoko F. Aoki-Kinoshita; Nobuhisa Ueda; Hiroshi Mamitsuka; Minoru Kanehisa (ISMB (Supplement of Bioinformatics), 2006)

A new efficient probabilistic model for mining labeled ordered trees. - Kosuke Hashimoto; Kiyoko F. Aoki-Kinoshita; Nobuhisa Ueda; Minoru Kanehisa; Hiroshi Mamitsuka (KDD, 2006)

A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology. - Kosuke Hashimoto; Kiyoko F. Aoki-Kinoshita; Nobuhisa Ueda; Minoru Kanehisa; Hiroshi Mamitsuka (ACM Trans. Knowl. Discov. Data, 2008)