Evolution of complexity in RNA-like replicator systems. - Nobuto Takeuchi; Paulien Hogeweg (ALIFE, 2008)

Multilevel Selection in Models of Prebiotic Evolution II: A Direct Comparison of Compartmentalization and Spatial Self-Organization. - Nobuto Takeuchi; Paulien Hogeweg (PLoS Comput. Biol., 2009)

On the Origin of DNA Genomes: Evolution of the Division of Labor between Template and Catalyst in Model Replicator Systems. - Nobuto Takeuchi; Paulien Hogeweg; Eugene V. Koonin (PLoS Comput. Biol., 2011)

Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes. - Atsushi Kamimura; Yoshiya Matsubara; Kunihiko Kaneko; Nobuto Takeuchi (PLoS Comput. Biol., 2019)