Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data. - Nobuyoshi Nagamine; Yasubumi Sakakibara (Bioinform., 2007)

Support Vector Machine Prediction of N- and O-glycosylation Sites Using Whole Sequence Information and Subcellular Localization. - Kenta Sasaki; Nobuyoshi Nagamine; Yasubumi Sakakibara (Inf. Media Technol., 2009)

Integrating Statistical Predictions and Experimental Verifications for Enhancing Protein-Chemical Interaction Predictions in Virtual Screening. - Nobuyoshi Nagamine; Takayuki Shirakawa; Yusuke Minato; Kentaro Torii; Hiroki Kobayashi; Masaya Imoto; Yasubumi Sakakibara (PLoS Comput. Biol., 2009)

COPICAT: a software system for predicting interactions between proteins and chemical compounds. - Yasubumi Sakakibara; Tsuyoshi Hachiya; Miho Uchida; Nobuyoshi Nagamine; Yohei Sugawara; Masahiro Yokota; Masaomi Nakamura; Kris Popendorf; Takashi Komori; Kengo Sato (Bioinform., 2012)