Ontology-Based Extraction and Summarization of Protein Mutation Impact Information. - Nona Naderi; René Witte (BioNLP@ACL, 2010)

Towards Evaluating the Impact of Semantic Support for Curating the Fungus Scientic Literature. - Marie-Jean Meurs; Caitlin Murphy; Nona Naderi; Ingo Morgenstern; Carolina Cantu; Shary Semarjit; Greg Butler; Justin Powlowski; Adrian Tsang; René Witte (CSWS, 2011)

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents. - Nona Naderi; Thomas Kappler; Christopher J. O. Baker; René Witte (Bioinform., 2011)

PHIO: A Knowledge Base for Interpretation and Calculation of Public Health Indicators. - Arash Shaban-Nejad; Anya Okhmatovskaia; Masoumeh T. Izadi; Nona Naderi; Luke Mondor; Christian Jauvin; David L. Buckeridge (MedInfo, 2013)

Vaccine attitude surveillance using semantic analysis: constructing a semantically annotated corpus. - Stephanie Brien; Nona Naderi; Arash Shaban-Nejad; Luke Mondor; Doerthe Kroemker; David L. Buckeridge (WWW (Companion Volume), 2013)

Argumentation, Ideology, and Issue Framing in Parliamentary Discourse. - Graeme Hirst; Vanessa Wei Feng; Christopher Cochrane; Nona Naderi (ArgNLP, 2014)

Argumentation Mining in Parliamentary Discourse. - Nona Naderi; Graeme Hirst (PRIMA Workshops, 2015)

Argumentation Quality Assessment: Theory vs. Practice. - Henning Wachsmuth; Nona Naderi; Ivan Habernal; Yufang Hou 001; Graeme Hirst; Iryna Gurevych; Benno Stein 001 (ACL (2), 2017)

Computational Argumentation Quality Assessment in Natural Language. - Henning Wachsmuth; Nona Naderi; Yufang Hou 001; Yonatan Bilu; Vinodkumar Prabhakaran; Tim Alberdingk Thijm; Graeme Hirst; Benno Stein 001 (EACL (1), 2017)

Recognizing Reputation Defence Strategies in Critical Political Exchanges. - Nona Naderi; Graeme Hirst (RANLP, 2017)

Classifying Frames at the Sentence Level in News Articles. - Nona Naderi; Graeme Hirst (RANLP, 2017)

Dagstuhl-15512-ArgQuality. - Henning Wachsmuth; Nona Naderi; Yufang Hou 001; Yonatan Bilu; Vinodkumar Prabhakaran; Tim Alberdingk Thijm; Graeme Hirst; Benno Stein 001 (Zenodo, 2017)

Using context to identify the language of face-saving. - Nona Naderi; Graeme Hirst (ArgMining@EMNLP, 2018)

Automated Fact-Checking of Claims in Argumentative Parliamentary Debates. - Nona Naderi; Graeme Hirst (FEVER@EMNLP, 2018)

A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. - Nona Naderi; Julien Gobeill; Douglas Teodoro; Emilie Pasche; Patrick Ruch (CLEF (Working Notes), 2019)

A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. - Paul Van Rijen; Douglas Teodoro; Nona Naderi; Luc Mottin; Julien Knafou; Matt Jeffryes; Patrick Ruch (CLEF (Working Notes), 2019)

BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. - Julien Knafou; Nona Naderi; Jenny Copara; Douglas Teodoro; Patrick Ruch (W-NUT@EMNLP, 2020)

Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models. - Jenny Copara; Nona Naderi; Julien Knafou; Patrick Ruch; Douglas Teodoro (CLEF (Working Notes), 2020)

An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. - Jiayuan He 002; Dat Quoc Nguyen; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Zubair Afzal; Zenan Zhai; Biaoyan Fang; Hiyori Yoshikawa; Ameer Albahem; Jingqi Wang; et al. (CLEF (Working Notes), 2020)

Contextualized French Language Models for Biomedical Named Entity Recognition. - Jenny Copara; Julien Knafou; Nona Naderi; Claudia Moro 001; Patrick Ruch; Douglas Teodoro (JEP-TALN-RECITAL (DEFT), 2020)

UPCLASS: a deep learning-based classifier for UniProtKB entry publications. - Douglas Teodoro; Julien Knafou; Nona Naderi; Emilie Pasche; Julien Gobeill; Cecilia N. Arighi; Patrick Ruch (Database J. Biol. Databases Curation, 2020)

Computational Analysis of Arguments and Persuasive Strategies in Political Discourse. - Nona Naderi (2020)

DS4DH at TREC Health Misinformation 2021: Multi-Dimensional Ranking Models with Transfer Learning and Rank Fusion. - Boya Zhang; Nona Naderi; Fernando Jaume-Santero; Douglas Teodoro (TREC, 2021)

Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora. - Nona Naderi; Julien Knafou; Jenny Copara; Patrick Ruch; Douglas Teodoro (Frontiers Res. Metrics Anal., 2021)

Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature. - Nona Naderi; Anaïs Mottaz; Douglas Teodoro; Patrick Ruch (MIE, 2022)

First Steps Towards a Risk of Bias Corpus of Randomized Controlled Trials. - Anjani Dhrangadhariya; Roger Hilfiker; Martin Sattelmayer; Katia Giacomino; Rahel Caliesch; Simone Elsig; Nona Naderi; Henning Müller (MIE, 2023)

Assessing the use of supplementary materials to improve genomic variant discovery. - Emilie Pasche; Anaïs Mottaz; Julien Gobeill; Pierre-André Michel; Déborah Caucheteur; Nona Naderi; Patrick Ruch (Database J. Biol. Databases Curation, 2023)

First Steps towards a Risk of Bias Corpus of Randomized Controlled Trials. - Anjani Dhrangadhariya; Roger Hilfiker; Martin Sattelmayer; Katia Giacomino; Rahel Caliesch; Simone Elsig; Nona Naderi; Henning Müller (Zenodo, 2023)

First Steps towards a Risk of Bias Corpus of Randomized Controlled Trials. - Anjani Dhrangadhariya; Roger Hilfiker; Martin Sattelmayer; Katia Giacomino; Rahel Caliesch; Simone Elsig; Nona Naderi; Henning Müller (Zenodo, 2023)

First Steps towards a Risk of Bias Corpus of Randomized Controlled Trials. - Anjani Dhrangadhariya; Roger Hilfiker; Martin Sattelmayer; Katia Giacomino; Rahel Caliesch; Simone Elsig; Nona Naderi; Henning Müller (Zenodo, 2023)

Transformer Performance for Chemical Reactions: Analysis of Different Predictive and Evaluation Scenarios. - Fernando Jaume-Santero; Alban Bornet; Alain Valery; Nona Naderi; David Vicente Alvarez; Dimitrios Proios; Anthony Yazdani; Colin Bournez; Thomas Fessard; Douglas Teodoro (J. Chem. Inf. Model., 2023)

Reproducibility in Named Entity Recognition: A Case Study Analysis. - Carlos Cuevas Villarmin; Sarah Cohen-Boulakia; Nona Naderi (e-Science, 2024)

Comparing Sequence-Based and Literature-Based Pathogenicity Scoring Methods for Human Variants. - Luc Mottin; Nona Naderi; Anaïs Mottaz; Pierre-André Michel; Lennart F. Johansson; Morris A. Swertz; Andrew Stubbs; Emilie Pasche; Julien Gobeill; Patrick Ruch (MIE, 2024)

SEME at SemEval-2024 Task 2: Comparing Masked and Generative Language Models on Natural Language Inference for Clinical Trials. - Mathilde Aguiar; Pierre Zweigenbaum; Nona Naderi (SemEval@NAACL, 2024)

A data-driven assessment of biomedical terminology evolution using information theoretical and network analysis approaches. - Jenny Copara; Nona Naderi; Gilles Falquet; Douglas Teodoro (CoRR, 2024)

A scoping review of artificial intelligence applications in clinical trial risk assessment. - Douglas Teodoro; Nona Naderi; Anthony Yazdani; Boya Zhang; Alban Bornet (npj Digit. Medicine, 2025)

Am I eligible? Natural Language Inference for Clinical Trial Patient Recruitment: the Patient's Point of View. - Mathilde Aguiar; Pierre Zweigenbaum; Nona Naderi (CoRR, 2025)

Collaborative Rational Speech Act: Pragmatic Reasoning for Multi-Turn Dialog. - Lautaro Estienne; Gabriel Ben Zenou; Nona Naderi; Jackie CK Cheung; Pablo Piantanida (CoRR, 2025)