The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structures. - Norihiro Kikuchi; Akihiko Kameyama; Shuuichi Nakaya; Hiromi Ito; Takashi Sato 002; Toshihide Shikanai; Yoriko Takahashi; Hisashi Narimatsu (Bioinform., 2005)

CellDesigner: a modeling tool for biochemical networks. - Akira Funahashi; Yukiko Matsuoka; Akiya Jouraku; Hiroaki Kitano; Norihiro Kikuchi (WSC, 2006)

Connecting Text Mining and Pathways using the PathText Resource. - Rune Sætre; Brian Kemper; Kanae Oda; Naoaki Okazaki; Yukiko Matsuoka; Norihiro Kikuchi; Hiroaki Kitano; Yoshimasa Tsuruoka; Sophia Ananiadou; Jun'ichi Tsujii (LREC, 2008)

CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks. - Akira Funahashi; Yukiko Matsuoka; Akiya Jouraku; Mineo Morohashi; Norihiro Kikuchi; Hiroaki Kitano (Proc. IEEE, 2008)

Payao: a community platform for SBML pathway model curation. - Yukiko Matsuoka; Samik Ghosh; Norihiro Kikuchi; Hiroaki Kitano (Bioinform., 2010)