Collaborative Constraint Functional Logic Programming in an Open Environment. - Norio Kobayashi; Mircea Marin; Tetsuo Ida (APLAS, 2001)

On the Development of an Analysis System for Upstream Sequences in Dictyostelium discoideum Genome. - Norio Kobayashi; Mircea Marin; Yoshimasa Tanaka; Hideko Urushihara (Inf. Media Technol., 2006)

OmicBrowse: a browser of multidimensional omics annotations. - Tetsuro Toyoda; Yoshiki Mochizuki; Keith Player; Naohiko Heida; Norio Kobayashi; Yoshiyuki Sakaki (Bioinform., 2007)

A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web. - Norio Kobayashi; Yuko Makita; Eli Kaminuma; Shuji Kawaguchi; Yuko Yoshida; Yoshiki Mochizuki; Akihiro Matsushima; Manabu Ishii; Ryo Umetsu; Satomi Asano; Naohiko Heida; Tetsuya Sakurai; et al. (SWAT4LS, 2008)

Penta and Hexa Statements are Suitable for Representing Omics Knowledge on the Semantic Web. - Norio Kobayashi; Tetsuro Toyoda (SWAT4LS, 2008)

Statistical search on the Semantic Web. - Norio Kobayashi; Tetsuro Toyoda (Bioinform., 2008)

OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. - Akihiro Matsushima; Norio Kobayashi; Yoshiki Mochizuki; Manabu Ishii; Shuji Kawaguchi; Takaho A. Endo; Ryo Umetsu; Yuko Makita; Tetsuro Toyoda (Nucleic Acids Res., 2009)

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. - Yuko Yoshida; Yuko Makita; Naohiko Heida; Satomi Asano; Akihiro Matsushima; Manabu Ishii; Yoshiki Mochizuki; Hiroshi Masuya; Shigeharu Wakana; Norio Kobayashi; Tetsuro Toyoda (Nucleic Acids Res., 2009)

An Advanced Strategy for Integration of Biological Measurement Data. - Hiroshi Masuya; Georgios V. Gkoutos; Nobuhiko Tanaka; Kazunori Waki; Yoshihiro Okuda; Tatsuya Kushida; Norio Kobayashi; Koji Doi; Kouji Kozaki; Robert Hoehndorf; Shigeharu Wakana; Tetsuro Toyoda; et al. (ICBO, 2011)

BioSPARQL: ontology-based smart building of SPARQL queries for biological linked open data. - Norio Kobayashi; Tetsuro Toyoda (SWAT4LS, 2011)

Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. - Norio Kobayashi; Manabu Ishii; Satoshi Takahashi; Yoshiki Mochizuki; Akihiro Matsushima; Tetsuro Toyoda (Nucleic Acids Res., 2011)

The RIKEN integrated database of mammals. - Hiroshi Masuya; Yuko Makita; Norio Kobayashi; Koro Nishikata; Yuko Yoshida; Yoshiki Mochizuki; Koji Doi; Terue Takatsuki; Kazunori Waki; Nobuhiko Tanaka; Manabu Ishii; Akihiro Matsushima; et al. (Nucleic Acids Res., 2011)

Development of Linked Open Data for Bioresources. - Hiroshi Masuya; Terue Takatsuki; Yuko Makita; Yuko Yoshida; Yoshiki Mochizuki; Norio Kobayashi; Atsushi Yoshiki; Yukio Nakamura; Tetsuro Toyoda; Yuichi Obata (JIST, 2012)

PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. - Norio Kobayashi; Yuko Makita; Manabu Ishii; Akihiro Matsushima; Yoshiki Mochizuki; Koji Doi; Koro Nishikata; David Gifford 002; Terue Takatsuki; Hiroshi Masuya; Tetsuro Toyoda (SWAT4LS, 2013)

PosMed: ranking genes and bioresources based on Semantic Web Association Study. - Yuko Makita; Norio Kobayashi; Yuko Yoshida; Koji Doi; Yoshiki Mochizuki; Koro Nishikata; Akihiro Matsushima; Satoshi Takahashi; Manabu Ishii; Terue Takatsuki; Rinki Bhatia; Zolzaya Khadbaatar; et al. (Nucleic Acids Res., 2013)

An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases. - Atsuko Yamaguchi; Kouji Kozaki; Kai Lenz; Hongyan Wu; Norio Kobayashi (IESD@ISWC, 2014)

Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets. - Norio Kobayashi; Kai Lenz; Hongyan Wu; Kouji Kozaki; Atsuko Yamaguchi (SWAT4LS, 2014)

Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases. - Atsuko Yamaguchi; Kouji Kozaki; Kai Lenz; Hongyan Wu; Yasunori Yamamoto; Norio Kobayashi (JIST, 2015)

RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web. - Norio Kobayashi; Kai Lenz; Hiroshi Masuya (SWAT4LS, 2015)

RDF-based Data Sharing of Bio-resource Related Information. - Hiroshi Masuya; Terue Takatsuki; Mikako Saito; Eiki Takayama; Kazuya Ohshima; Nozomu Ohshiro; Kai Lenz; Nobuhiko Tanaka; Hiroshi Mori; Shuichi Kawashima; Norio Kobayashi (SWAT4LS, 2015)

RDF-Based Integration with SPARQL Building System for Life Science Database Archive. - Atsuko Yamaguchi; Katsuhiko Okubo; Norio Kobayashi; Kouji Kozaki; Sadahiro Kumagai; Kai Lenz; Tomoe Nobusada; Hongyan Wu; Yasunori Yamamoto; Hideki Hatanaka (SWAT4LS, 2015)

RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. - Norio Kobayashi; Kai Lenz; Hiroshi Masuya (JIST (Workshops & Posters), 2016)

Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data. - Atsuko Yamaguchi; Kouji Kozaki; Kai Lenz; Yasunori Yamamoto; Hiroshi Masuya; Norio Kobayashi (JIST, 2016)

SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases. - Atsuko Yamaguchi; Kouji Kozaki; Kai Lenz; Yasunori Yamamoto; Hiroshi Masuya; Norio Kobayashi (JIST (Workshops & Posters), 2016)

Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. - Satoshi Kume; Hiroshi Masuya; Yosky Kataoka; Norio Kobayashi (ISWC (Posters & Demos), 2016)

RIKEN MetaDatabase: a Database Publication Platform for RIKENs Life-science Researchers that Promotes Research Collaborations over Different Research Area. - Kai Lenz; Hiroshi Masuya; Norio Kobayashi (ISWC (Posters & Demos), 2016)

A RDF based Portal of Biological Phenotype Data produced in Japan. - Terue Takatsuki; Mikako Saito; Sadahiro Kumagai; Eiki Takayama; Kazuya Ohshima; Nozomu Ohshiro; Kai Lenz; Nobuhiko Tanaka; Norio Kobayashi; Hiroshi Masuya (ISWC (Posters & Demos), 2016)

Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data. - Atsuko Yamaguchi; Kouji Kozaki; Kai Lenz; Yasunori Yamamoto; Hiroshi Masuya; Norio Kobayashi (ISWC (Posters & Demos), 2016)

SPARQL Query Construction with Monitoring Service for Endpoints. - Atsuko Yamaguchi; Yasunori Yamamoto; Kouji Kozaki; Kai Lenz; Hiroshi Masuya; Norio Kobayashi (SWAT4LS, 2016)

Development of Semantic Web-Based Imaging Database for Biological Morphome. - Satoshi Kume; Hiroshi Masuya; Mitsuyo Maeda; Mitsuo Suga; Yosky Kataoka; Norio Kobayashi (JIST, 2017)

Semantic Graph Analysis for Federated LOD Surfing in Life Sciences. - Atsuko Yamaguchi; Kouji Kozaki; Yasunori Yamamoto; Hiroshi Masuya; Norio Kobayashi (JIST, 2017)

Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase. - Norio Kobayashi; Satoshi Kume; Hiroshi Masuya (SWAT4LS, 2017)

LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences. - Atsuko Yamaguchi; Kouji Kozaki; Yasunori Yamamoto; Hiroshi Masuya; Norio Kobayashi (SWAT4LS, 2017)

RIKEN MetaDatabase: A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud. - Norio Kobayashi; Satoshi Kume; Kai Lenz; Hiroshi Masuya (Int. J. Semantic Web Inf. Syst., 2018)

OME Core Ontology: An OWL-based Life Science Imaging Data Model. - Norio Kobayashi; Josh Moore; Shuichi Onami; Jason R. Swedlow (SWAT4HCLS, 2019)

UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences. - Norio Kobayashi; Yasunori Yamamoto; Atsuko Yamaguchi (SWAT4HCLS, 2019)

On Bringing Bioimaging Data into the Open (World). - Josh Moore; Norio Kobayashi; Susanne Kunis; Shuichi Onami; Jason R. Swedlow (SWAT4HCLS, 2019)

ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks. - Masahiko Morita; Kazuro Shimokawa; Masaomi Nishimura; Sakiko Nakamura; Yuki Tsujimura; Satoko Takemoto; Takehiro Tawara; Hideo Yokota; Shuhei Wemler; Daisuke Miyamoto; Hidetoshi Ikeno; Akira Sato; et al. (Nucleic Acids Res., 2019)

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. - Imad Abugessaisa; Jordan A. Ramilowski; Marina Lizio; Jesicca Severin; Akira Hasegawa; Jayson Harshbarger; Atsushi Kondo; Shuhei Noguchi; Chi Wai Yip; Jasmine Li Ching Ooi; Michihira Tagami; Fumi Hori; et al. (Nucleic Acids Res., 2021)

Developing a semantic event search engine for biomedical events. - Julio Cesar Rangel Reyes; Norio Kobayashi (SWAT4HCLS, 2023)

SPARQL generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph. - Julio Cesar Rangel Reyes; Tarcisio Mendes de Farias; Ana Claudia Sima; Norio Kobayashi (SWAT4HCLS, 2024)