Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. - Makoto Taiji; Tetsu Narumi; Yousuke Ohno; Noriyuki Futatsugi; Atsushi Suenaga; Naoki Takada; Akihiko Konagaya (SC, 2003)

Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3. - Tetsu Narumi; Yousuke Ohno; Noriaki Okimoto; Takahiro Koishi; Atsushi Suenaga; Noriyuki Futatsugi; Ryoko Yanai; Ryutaro Himeno; Shigenori Fujikawa; Makoto Taiji; Mitsuru Ikei (SC, 2006)

High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations. - Noriaki Okimoto; Noriyuki Futatsugi; Hideyoshi Fuji; Atsushi Suenaga; Gentaro Morimoto; Ryoko Yanai; Yousuke Ohno; Tetsu Narumi; Makoto Taiji (PLoS Comput. Biol., 2009)