Can you Really Anonymize the Donors of Genomic Data in Today's Digital World? - Mohammed Alser; Nour Almadhoun; Azita Nouri; Can Alkan; Erman Ayday (DPM/QASA@ESORICS, 2015)

Differential privacy under dependent tuples - the case of genomic privacy. - Nour Almadhoun; Erman Ayday; Özgür Ulusoy (Bioinform., 2020)

Inference attacks against differentially private query results from genomic datasets including dependent tuples. - Nour Almadhoun; Erman Ayday; Özgür Ulusoy (Bioinform., 2020)

On the tradeoff between privacy and utility in genomic studies: Differential privacy under dependent tuples (Genomik çalışmalarda gizlilik ve verinin işe yararlılığı üzerine analiz: Bağımlı elemanlar altında diferansiyel gizlilik) - Nour Almadhoun Alserr (2020)

COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model. - Mohammed Alser; Jeremie S. Kim; Nour Almadhoun Alserr; Stefan W. Tell; Onur Mutlu (CoRR, 2021)

Near-Optimal Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding. - Nour Almadhoun Alserr; Gulce Kale; Onur Mutlu; Öznur Tastan; Erman Ayday (CoRR, 2021)

GenShare: Sharing Accurate Differentially-Private Statistics for Genomic Datasets with Dependent Tuples. - Nour Almadhoun Alserr; Özgür Ulusoy; Erman Ayday; Onur Mutlu (CoRR, 2021)

GenStore: a high-performance in-storage processing system for genome sequence analysis. - Nika Mansouri-Ghiasi; Jisung Park 001; Harun Mustafa; Jeremie S. Kim; Ataberk Olgun; Arvid Gollwitzer; Damla Senol Cali; Can Firtina; Haiyu Mao; Nour Almadhoun Alserr; Rachata Ausavarungnirun; Nandita Vijaykumar; et al. (ASPLOS, 2022)

SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping. - Damla Senol Cali; Konstantinos Kanellopoulos; Joël Lindegger; Zülal Bingöl; Gurpreet S. Kalsi; Ziyi Zuo; Can Firtina; Meryem Banu Cavlak; Jeremie S. Kim; Nika Mansouri-Ghiasi; Gagandeep Singh 002; Juan Gómez-Luna; et al. (ISCA, 2022)

GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis. - Nika Mansouri-Ghiasi; Jisung Park 001; Harun Mustafa; Jeremie S. Kim; Ataberk Olgun; Arvid Gollwitzer; Damla Senol Cali; Can Firtina; Haiyu Mao; Nour Almadhoun Alserr; Rachata Ausavarungnirun; Nandita Vijaykumar; et al. (ISVLSI, 2022)

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping. - Haiyu Mao; Mohammed Alser; Mohammad Sadrosadati; Can Firtina; Akanksha Baranwal; Damla Senol Cali; Aditya Manglik; Nour Almadhoun Alserr; Onur Mutlu (MICRO, 2022)

GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis. - Nika Mansouri-Ghiasi; Jisung Park 001; Harun Mustafa; Jeremie S. Kim; Ataberk Olgun; Arvid Gollwitzer; Damla Senol Cali; Can Firtina; Haiyu Mao; Nour Almadhoun Alserr; Rachata Ausavarungnirun; Nandita Vijaykumar; et al. (CoRR, 2022)

Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities. - Mohammed Alser; Sharon Waymost; Ram Ayyala; Brendan Lawlor; Richard J. Abdill; Neha Rajkumar; Nathan LaPierre; Jaqueline J. Brito; Andre M. Ribeiro-dos-Santos; Can Firtina; Nour Almadhoun; Varuni Sarwal; et al. (CoRR, 2022)

Going From Molecules to Genomic Variations to Scientific Discovery: Intelligent Algorithms and Architectures for Intelligent Genome Analysis. - Mohammed Alser; Joël Lindegger; Can Firtina; Nour Almadhoun; Haiyu Mao; Gagandeep Singh 002; Juan Gómez-Luna; Onur Mutlu (CoRR, 2022)

COVIDHunter: COVID-19 pandemic wave prediction and mitigation via seasonality-aware modeling. - Mohammed Alser; Jeremie S. Kim; Nour Almadhoun Alserr; Stefan W. Tell; Onur Mutlu (CoRR, 2022)

SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences. - Maximilian-David Rumpf; Mohammed Alser; Arvid E. Gollwitzer; Joël Lindegger; Nour Almadhoun; Can Firtina; Serghei Mangul; Onur Mutlu (CoRR, 2023)