A New Gene Selection Technique Using Feature Selection Methodology. - Noushin Ghaffari; Hisham Al-Mubaid (CATA, 2006)

Identifying the most significant genes from gene expression profiles for sample classification. - Hisham Al-Mubaid; Noushin Ghaffari (GrC, 2006)

Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using Semi-Supervised Learning. - Cole Harris; Noushin Ghaffari (BIOCOMP, 2007)

A CoD based reduction algorithm for Boolean and probabilistic Boolean networks. - Noushin Ghaffari; Ivan Ivanov 001; Edward R. Dougherty (GENSiPS, 2009)

Intervention in gene regulatory networks via greedy control policies based on long-run behavior. - Xiaoning Qian; Ivan Ivanov 001; Noushin Ghaffari; Edward R. Dougherty (BMC Syst. Biol., 2009)

A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. - Noushin Ghaffari; Ivan Ivanov 001; Xiaoning Qian; Edward R. Dougherty (Bioinform., 2010)

State reduction for network intervention in probabilistic Boolean networks. - Xiaoning Qian; Noushin Ghaffari; Ivan Ivanov 001; Edward R. Dougherty (Bioinform., 2010)

Selection policy-induced reduction mappings for Boolean networks. - Ivan Ivanov 001; Plamen Simeonov; Noushin Ghaffari; Xiaoning Qian; Edward R. Dougherty (IEEE Trans. Signal Process., 2010)

A CoD-based stationary control policy for intervening in large gene regulatory networks. - Noushin Ghaffari; Ivan Ivanov 001; Xiaoning Qian; Edward R. Dougherty (BMC Bioinform., 2011)

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. - Ying Wang; Noushin Ghaffari; Charles D. Johnson; Ulisses M. Braga-Neto; Hui Wang; Rui Chen; Huaijun Zhou (BMC Bioinform., 2011)

Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification. - Noushin Ghaffari; Mohammadmahdi R. Yousefi; Charles D. Johnson; Ivan Ivanov 001; Edward R. Dougherty (BMC Bioinform., 2013)

De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp. - Noushin Ghaffari; Osama A. Arshad; Hyundoo Jeong; John Thiltges; Michael F. Criscitiello; Byung-Jun Yoon; Aniruddha Datta; Charles D. Johnson (GlobalSIP, 2014)

Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. - Noushin Ghaffari; Jordi Abante; Raminder Singh; Philip D. Blood; Charles D. Johnson (XSEDE, 2016)

Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy. - Chun-Chi Chen; Noushin Ghaffari; Xiaoning Qian; Byung-Jun Yoon (Comput. Biol. Chem., 2017)

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline. - Noushin Ghaffari; Osama A. Arshad; Hyundoo Jeong; John Thiltges; Michael F. Criscitiello; Byung-Jun Yoon; Aniruddha Datta; Charles D. Johnson (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Workflow for Understanding the Phenotypic Characteristics of Seals by Epigenetic Analysis. - Noushin Ghaffari; Swaathi Suguna Venkatesh; Rabeya Nazara; Oluwaseyi Oladejo; Rakshith Puligundla Venugopal; Stephen J. Gaughran; Bridgett M. Vonholdt (PEARC, 2023)

Exploring Unsupervised Machine Learning Techniques for Genomic Island Categorization. - Noushin Ghaffari; Lijie Zhou; Catherine M. Mageeney; Kelly Porter Williams (PEARC, 2023)

Comparative Computational Approach for Evaluating Transposon Detection in Genomic Data. - Fatema Shormin; Noushin Ghaffari; Catherine M. Mageeney; Kelly Porter Williams (PEARC, 2023)

Unsupervised Machine Learning Techniques to Categorize Genomic Islands. - Noushin Ghaffari; Lijie Zhou; Rabeya Nazara; Catherine M. Mageeney; Kelly P. Williams (EIT, 2024)