Deep convolutional neural networks for segmenting 3D in vivo multiphoton images of vasculature in Alzheimer disease mouse models. - Mohammad Haft-Javaherian; Linjing Fang; Victorine P. Muse; Chris B. Schaffer; Nozomi Nishimura; Mert R. Sabuncu (CoRR, 2018)

A topological encoding convolutional neural network for segmentation of 3D multiphoton images of brain vasculature using persistent homology. - Mohammad Haft-Javaherian; Martin Villiger; Chris B. Schaffer; Nozomi Nishimura; Polina Golland; Brett E. Bouma (CVPR Workshops, 2020)

Computational modeling of multiscale collateral blood supply in a whole-brain-scale arterial network. - Tomohiro Otani; Nozomi Nishimura; Hiroshi Yamashita; Satoshi Ii; Shigeki Yamada; Yoshiyuki Watanabe; Marie Oshima; Shigeo Wada (PLoS Comput. Biol., 2023)