HybGFS: a hybrid method for genome-fingerprint scanning. - Kosaku Shinoda; Nozomu Yachie; Takeshi Masuda; Naoyuki Sugiyama; Masahiro Sugimoto; Tomoyoshi Soga; Masaru Tomita (BMC Bioinform., 2006)

SPLITS: A New Program for Predicting Split and Intron-Containing tRNA Genes at the Genome Level. - Junichi Sugahara; Nozomu Yachie; Yasuhiko Sekine; Akiko Soma; Motomu Matsui; Masaru Tomita; Akio Kanai (Silico Biol., 2006)

eXpanda: An Integrated Platform for Network Analysis and Visualization. - Yoshiteru Negishi; Hiroyuki Nakamura; Nozomu Yachie; Rintaro Saito; Masaru Tomita (Silico Biol., 2007)

Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. - Haruna Imamura; Nozomu Yachie; Rintaro Saito; Yasushi Ishihama; Masaru Tomita (BMC Bioinform., 2010)

Integrative Features of the Yeast Phosphoproteome and Protein-Protein Interaction Map. - Nozomu Yachie; Rintaro Saito; Naoyuki Sugiyama; Masaru Tomita; Yasushi Ishihama (PLoS Comput. Biol., 2011)