The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. - Miguel C. Teixeira; Pedro T. Monteiro 001; Pooja Jain; Sandra Tenreiro; Alexandra R. Fernandes; Nuno P. Mira; Marta Alenquer; Ana T. Freitas; Arlindo L. Oliveira; Isabel Sá-Correia (Nucleic Acids Res., 2006)

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. - Pedro T. Monteiro 001; Nuno D. Mendes; Miguel C. Teixeira; Sofia d'Orey; Sandra Tenreiro; Nuno P. Mira; Hélio Pais; Alexandre P. Francisco; Alexandra M. Carvalho; Artur B. Lourenço; Isabel Sá-Correia; Arlindo L. Oliveira; et al. (Nucleic Acids Res., 2008)

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. - Joana P. Gonçalves; Alexandre P. Francisco; Nuno P. Mira; Miguel C. Teixeira; Isabel Sá-Correia; Arlindo L. Oliveira; Sara C. Madeira (Bioinform., 2011)

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. - Dário Abdulrehman; Pedro T. Monteiro 001; Miguel C. Teixeira; Nuno P. Mira; Artur B. Lourenço; Sandra Costa dos Santos; Tânia Rodrigues Cabrito; Alexandre P. Francisco; Sara C. Madeira; Ricardo Santos Aires; Arlindo L. Oliveira; Isabel Sá-Correia; et al. (Nucleic Acids Res., 2011)

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. - Miguel Cacho Teixeira; Pedro Tiago Monteiro 001; Joana Fernandes Guerreiro; Joana Pinho Gonçalves; Nuno Pereira Mira; Sandra Costa dos Santos; Tânia Rodrigues Cabrito; Margarida Palma; Catarina Costa; Alexandre Paulo Francisco; Sara Cordeiro Madeira; Arlindo Limede Oliveira; et al. (Nucleic Acids Res., 2014)

MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering. - Ricardo Andrade; Mahdi Doostmohammadi; João L. Santos; Marie-France Sagot; Nuno P. Mira; Susana Vinga (BMC Bioinform., 2020)