HotSprint: database of computational hot spots in protein interfaces. - Emre Guney; Nurcan Tuncbag; Ozlem Keskin; Attila Gürsoy (Nucleic Acids Res., 2008)

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. - Nurcan Tuncbag; Gozde Kar; Ozlem Keskin; Attila Gürsoy; Ruth Nussinov (Briefings Bioinform., 2009)

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. - Nurcan Tuncbag; Attila Gürsoy; Ozlem Keskin (Bioinform., 2009)

HotPoint: hot spot prediction server for protein interfaces. - Nurcan Tuncbag; Ozlem Keskin; Attila Gürsoy (Nucleic Acids Res., 2010)

SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways. - Nurcan Tuncbag; Scott McCallum; Shao-Shan Carol Huang; Ernest Fraenkel (Nucleic Acids Res., 2012)

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. - Nurcan Tuncbag; Alfredo Braunstein; Andrea Pagnani; Shao-Shan Carol Huang; Jennifer T. Chayes; Christian Borgs; Riccardo Zecchina; Ernest Fraenkel (J. Comput. Biol., 2013)

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package. - Nurcan Tuncbag; Sara J. C. Gosline; Amanda J. Kedaigle; Anthony R. Soltis; Anthony Gitter; Ernest Fraenkel (PLoS Comput. Biol., 2016)

3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. - Cansu Dincer; Tugba Turkoglu Kaya; Ozlem Keskin; Attila Gürsoy; Nurcan Tuncbag (PLoS Comput. Biol., 2019)

Network Medicine: From Conceptual Frameworks to Applications and Future Trends. - Enes Sefa Ayar; Sina Dadmand; Nurcan Tuncbag (IEEE Trans. Mol. Biol. Multi Scale Commun., 2023)

Unveiling hidden connections in omics data via pyPARAGON: an integrative hybrid approach for disease network construction. - Muslum Kaan Arici; Nurcan Tuncbag (Briefings Bioinform., 2024)

Structural coverage of the human interactome. - Kayra Kosoglu; Zeynep Aydin; Nurcan Tuncbag; Attila Gürsoy; Ozlem Keskin (Briefings Bioinform., 2024)

BioNet-XR: Biological Network Visualization Framework for Virtual Reality and Mixed Reality Environments. - Büsra Senderin; Nurcan Tuncbag; Elif Sürer (CoRR, 2024)