A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. - Gilad Wainreb; Nurit Haspel; Haim J. Wolfson; Ruth Nussinov (Bioinform., 2006)

Computational modeling and prediction of self assembling [beta]-sheet rich protein structures - Nurit Haspel (2006)

Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale. - David Zanuy; Gema Ballano; Ana I. Jiménez; Jordi Casanovas; Nurit Haspel; Carlos Cativiela; David Curcó; Ruth Nussinov; Carlos Alemán (J. Chem. Inf. Model., 2009)

Tracing Conformational Changes in Proteins Represented at a Coarse Level. - Nurit Haspel (BIONETICS, 2010)

Refinement of docked protein complex structures using evolutionary traces. - Bahar Akbal-Delibas; Irina Hashmi; Amarda Shehu; Nurit Haspel (BIBM Workshops, 2011)

Protein docking with information on evolutionary conserved interfaces. - Irina Hashmi; Bahar Akbal-Delibas; Nurit Haspel; Amarda Shehu (BIBM Workshops, 2011)

The 5th International Conference on Bio-Inspired Models of Network, Information and Computing Systems (Bionetics 2010) Special Track on Bioinformatics. - Nurit Haspel; Amarda Shehu (J. Bioinform. Comput. Biol., 2011)

Refining multimeric protein complexes using conservation, electrostatics and probabilistic selection. - Bahar Akbal-Delibas; Nurit Haspel (BIBM Workshops, 2012)

An evolutionary-guided iterative refinement approach for protein multimers. - Bahar Akbal-Delibas; Nurit Haspel (BIBM Workshops, 2012)

Towards a hybrid method for detecting critical protein residues. - Bahar Akbal-Delibas; Filip Jagodzinski; Nurit Haspel (BIBM Workshops, 2012)

Combining conservation and rigidity methods to detect critical residues in proteins. - Bahar Akbal-Delibas; Filip Jagodzinski; Nurit Haspel (BIBM Workshops, 2012)

Characterizing Intermediate Conformations in Protein Conformational Space. - Rosanne Vetro; Nurit Haspel; Dan A. Simovici (CIBB, 2012)

An Evolutionary conservation-Based Method for Refining and Reranking protein Complex Structures. - Bahar Akbal-Delibas; Irina Hashmi; Amarda Shehu; Nurit Haspel (J. Bioinform. Comput. Biol., 2012)

Guiding protein docking with Geometric and Evolutionary Information. - Irina Hashmi; Bahar Akbal-Delibas; Nurit Haspel; Amarda Shehu (J. Bioinform. Comput. Biol., 2012)

An Evolutionary Conservation & Rigidity Analysis Machine Learning Approach for Detecting Critical Protein Residues. - Filip Jagodzinski; Bahar Akbal-Delibas; Nurit Haspel (BCB, 2013)

Multi-Resolution Rigidity-Based Sampling of Protein Conformational Paths. - Dong Luo; Nurit Haspel (BCB, 2013)

AccuRMSD: a machine learning approach to predicting structure similarity of docked protein complexes. - Bahar Akbal-Delibas; Marc Pomplun; Nurit Haspel (BCB, 2014)

TIDE: Inter-chromosomal translocation and insertion detection using embeddings. - Rosanne Vetro; Roshanak Farhoodi; Rohith Kotla; Nurit Haspel; David Weisman; Jennifer Rosen; Dan A. Simovici (IEEE BigData, 2014)

Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. - Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel (BIBM, 2015)

A new DP algorithm for comparing gene expression data using geometric similarity. - Amir Vajdi; Nurit Haspel; Hadi Banaee (BIBM, 2015)

Accurate Prediction of Docked Protein Structure Similarity. - Bahar Akbal-Delibas; Marc Pomplun; Nurit Haspel (J. Comput. Biol., 2015)

The 7th Computational Structural Bioinformatics Workshop. - Jing He 002; Amarda Shehu; Nurit Haspel; Brian Chen (J. Comput. Biol., 2015)

Assessing how multiple mutations affect protein stability using rigid cluster size distributions. - Erik Andersson; Rebecca Hsieh; Howard Szeto; Roshanak Farhoodi; Nurit Haspel; Filip Jagodzinski (ICCABS, 2016)

Accurate refinement of docked protein complexes using evolutionary information and deep learning. - Bahar Akbal-Delibas; Roshanak Farhoodi; Marc Pomplun; Nurit Haspel (J. Bioinform. Comput. Biol., 2016)

Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015). - Fahad Saeed; Nurit Haspel; Hisham Al-Mubaid (J. Bioinform. Comput. Biol., 2016)

Ranking Protein-Protein Binding Using Evolutionary Information and Machine Learning. - Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel (BCB, 2017)

Predicting the Effect of Point Mutations on Protein Structural Stability. - Roshanak Farhoodi; Max Shelbourne; Rebecca Hsieh; Nurit Haspel; Brian Hutchinson; Filip Jagodzinski (BCB, 2017)

The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017. - Nurit Haspel; Amarda Shehu; Kevin Molloy (BCB, 2017)

Detecting chromosomal structural variation using jaccard distance and parallel architecture. - Hamidreza Mohebbi; Amir Vajdi; Nurit Haspel; Dan A. Simovici (BIBM, 2017)

Detecting intermediate protein conformations using algebraic topology. - Nurit Haspel; Dong Luo; Eduardo Gonzalez (BMC Bioinform., 2017)

Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016). - Nurit Haspel; Thomas R. Ioerger; Hisham Al-Mubaid (J. Bioinform. Comput. Biol., 2017)

Machine Learning Approaches for Predicting Protein Complex Similarity. - Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel (J. Comput. Biol., 2017)

Preface: Selected Articles from 2015 Computational Structural Bioinformatics Workshop. - Jing He 002; Nurit Haspel; Brian Chen (J. Comput. Biol., 2017)

Integrating Co-Evolutionary Information in Monte Carlo Based Method for Proteins Trajectory Simulation. - Amir Vajdi; Arpita Joshi; Nurit Haspel (BCB, 2019)

Patch-DCA: improved protein interface prediction by utilizing structural information and clustering DCA scores. - Amir Vajdi; Kourosh Zarringhalam; Nurit Haspel (Bioinform., 2020)

Assessing the Effects of Amino Acid Insertion and Deletion Mutations. - Muneeba Jilani; Alistair Turcan; Nurit Haspel; Filip Jagodzinski (BIBM, 2021)

Investigating the Role of Gene Body Methylation and CpG Methylation in Cancer Subtyping. - Muneeba Jilani; Nurit Haspel (ICBRA, 2023)

Elucidating Cancer Subtypes by Using Epigenome and Genome Cross-Talk. - Muneeba Jilani; Nurit Haspel (IWBBIO (1), 2024)

Allosteric Activation of RhoA Complexed with p115-RhoGEF Deciphered by Conformational Dynamics. - Nurit Haspel; Hyunbum Jang; Ruth Nussinov (J. Chem. Inf. Model., 2024)