SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures. - Nurul Nadzirin; Eleanor J. Gardiner; Peter Willett 002; Peter J. Artymiuk; Mohd Firdaus Raih (Nucleic Acids Res., 2012)

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank. - Nurul Nadzirin; Peter Willett 002; Peter J. Artymiuk; Mohd Firdaus Raih (Nucleic Acids Res., 2013)

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures. - Mohd Firdaus Raih; Hazrina Yusof Hamdani; Nurul Nadzirin; Effirul Ikhwan Ramlan; Peter Willett 002; Peter J. Artymiuk (Nucleic Acids Res., 2014)

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. - Sameer Velankar; Glen van Ginkel; Younes Alhroub; Gary M. Battle; John M. Berrisford; Matthew J. Conroy; Jose M. Dana; Swanand P. Gore; Aleksandras Gutmanas; Pauline Haslam; Pieter M. S. Hendrickx; Ingvar C. Lagerstedt; et al. (Nucleic Acids Res., 2016)

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. - Saqib Mir; Younes Alhroub; Stephen Anyango; David R. Armstrong; John M. Berrisford; Alice R. Clark; Matthew J. Conroy; Jose M. Dana; Mandar S. Deshpande; Deepti Gupta; Aleksandras Gutmanas; Pauline Haslam; et al. (Nucleic Acids Res., 2018)

PDBe: improved findability of macromolecular structure data in the PDB. - David R. Armstrong; John M. Berrisford; Matthew J. Conroy; Aleksandras Gutmanas; Stephen Anyango; Preeti Choudhary; Alice R. Clark; Jose M. Dana; Mandar S. Deshpande; Roisin Dunlop; Paul J. Gane; Romana Gáborová; et al. (Nucleic Acids Res., 2020)

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data. - Sreenath Nair; Mihaly Varadi; Nurul Nadzirin; Lukás Pravda; Stephen Anyango; Saqib Mir; John M. Berrisford; David R. Armstrong; Aleksandras Gutmanas; Sameer Velankar (Bioinform., 2021)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank. - Ibrahim Roshan Kunnakkattu; Preeti Choudhary; Lukás Pravda; Nurul Nadzirin; Oliver S. Smart; Qi Yuan; Stephen Anyango; Sreenath Nair; Mihaly Varadi; Sameer Velankar (J. Cheminformatics, 2023)