riboviz: analysis and visualization of ribosome profiling datasets. - Oana Carja; Tongji Xing; Edward W. J. Wallace; Joshua B. Plotkin; Premal Shah (BMC Bioinform., 2017)

Evolutionary graph theory beyond pairwise interactions: Higher-order network motifs shape times to fixation in structured populations. - Yang Ping Kuo; Oana Carja (PLoS Comput. Biol., 2024)