Neuronal Fiber Delineation in Area of Edema from Diffusion Weighted MRI. - Ofer Pasternak; Nir A. Sochen; Nathan Intrator; Yaniv Assaf (NIPS, 2005)

Variational Regularization of Multiple Diffusion Tensor Fields. - Ofer Pasternak; Nir A. Sochen; Yaniv Assaf (Visualization and Processing of Tensor Fields, 2006)

Characterization of displaced white matter by brain tumors using combined DTI and fMRI. - Tom Schonberg; Pazit Pianka; Talma Hendler; Ofer Pasternak; Yaniv Assaf (NeuroImage, 2006)

Fast GL(n)-Invariant Framework for Tensors Regularization. - Yaniv Gur; Ofer Pasternak; Nir A. Sochen (Int. J. Comput. Vis., 2009)

Cluster analysis of resting-state fMRI time series. - Aviv A. Mezer; Yossi Yovel; Ofer Pasternak; Tali Gorfine; Yaniv Assaf (NeuroImage, 2009)

Feature extraction from diffusion MRI of complex brain architecture - Ofer Pasternak (2009)

The effect of metric selection on the analysis of diffusion tensor MRI data. - Ofer Pasternak; Nir A. Sochen; Peter J. Basser (NeuroImage, 2010)

Structural correlates of memory performance with diffusion tensor imaging. - Efrat Sasson; Glen M. Doniger; Ofer Pasternak; Yaniv Assaf (NeuroImage, 2010)

SPD Tensors Regularization via Iwasawa Decomposition. - Yaniv Gur; Ofer Pasternak; Nir A. Sochen (Mathematical Methods for Signal and Image Analysis and Representation, 2012)

Estimation of Extracellular Volume from Regularized Multi-shell Diffusion MRI. - Ofer Pasternak; Martha Elizabeth Shenton; Carl-Fredrik Westin (MICCAI (2), 2012)

How and how not to correct for CSF-contamination in diffusion MRI. - Claudia Metzler-Baddeley; Michael J. O'Sullivan; Sonya Bells; Ofer Pasternak; Derek K. Jones (NeuroImage, 2012)

The Estimation of Free-Water Corrected Diffusion Tensors. - Ofer Pasternak; Klaus H. Maier-Hein; Christian F. Baumgartner; Martha Elizabeth Shenton; Yogesh Rathi; Carl-Fredrik Westin (Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, 2014)

Measurement Tensors in Diffusion MRI: Generalizing the Concept of Diffusion Encoding. - Carl-Fredrik Westin; Filip Szczepankiewicz; Ofer Pasternak; Evren Özarslan; Daniel Topgaard; Hans Knutsson; Markus Nilsson (MICCAI (3), 2014)

Harmonizing Diffusion MRI Data Across Multiple Sites and Scanners. - Hengameh Mirzaalian; Amicie de Pierrefeu; Peter Savadjiev; Ofer Pasternak; Sylvain Bouix; Marek Kubicki; Carl-Fredrik Westin; Martha Elizabeth Shenton; Yogesh Rathi (MICCAI (1), 2015)

Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. - Zhenrui Chen; Yanmei Tie; Olutayo I. Olubiyi; Fan Zhang 013; Alireza Mehrtash; Laura Rigolo; Pegah Kahali; Isaiah Norton; Ofer Pasternak; Yogesh Rathi; Alexandra J. Golby; Lauren J. O'Donnell (Int. J. Comput. Assist. Radiol. Surg., 2016)

Inter-site and inter-scanner diffusion MRI data harmonization. - Hengameh Mirzaalian; Lipeng Ning; Peter Savadjiev; Ofer Pasternak; Sylvain Bouix; Oleg V. Michailovich; Gerald Grant; Christine E. Marx; Rajendra A. Morey; Laura A. Flashman; Marie St. George; Thomas W. McAllister; et al. (NeuroImage, 2016)

Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. - Carl-Fredrik Westin; Hans Knutsson; Ofer Pasternak; Filip Szczepankiewicz; Evren Özarslan; Danielle van Westen; Cecilia Mattisson; Mats Bogren; Lauren J. O'Donnell; Marek Kubicki; Daniel Topgaard; Markus Nilsson (NeuroImage, 2016)

"Evaluating Acquisition Time of rfMRI in the Human Connectome Project for Early Psychosis. How Much Is Enough?". - Sylvain Bouix; Sophia Swago; John D. West; Ofer Pasternak; Alan Breier; Martha Elizabeth Shenton (CNI@MICCAI, 2017)

Separating blood and water: Perfusion and free water elimination from diffusion MRI in the human brain. - Anna S. Rydhög; Filip Szczepankiewicz; Ronnie Wirestam; André Ahlgren; Carl-Fredrik Westin; Linda Knutsson; Ofer Pasternak (NeuroImage, 2017)

Characterizing Peritumoral Tissue Using DTI-Based Free Water Elimination. - Abdol Aziz Ould Ismail; Drew Parker; Moisés Hernández-Fernández; Steven Brem; Simon Alexander; Ofer Pasternak; Emmanuel Caruyer; Ragini Verma (BrainLes@MICCAI (1), 2018)

Advances in microstructural diffusion neuroimaging for psychiatric disorders. - Ofer Pasternak; Sinead Kelly; Valerie J. Sydnor; Martha Elizabeth Shenton (NeuroImage, 2018)

MK-curve - Characterizing the relation between mean kurtosis and alterations in the diffusion MRI signal. - Fan Zhang 013; Lipeng Ning; Lauren J. O'Donnell; Ofer Pasternak (NeuroImage, 2019)

The association of white matter free water with cognition in older adults. - Joseph M. Gullett; Andrew M. O'Shea; Damon G. Lamb; Eric C. Porges; Deirdre M. O'Shea; Ofer Pasternak; Ronald A. Cohen; Adam J. Woods (NeuroImage, 2020)

Deep learning based segmentation of brain tissue from diffusion MRI. - Fan Zhang 013; Anna Breger; Kang Ik Kevin Cho; Lipeng Ning; Carl-Fredrik Westin; Lauren J. O'Donnell; Ofer Pasternak (NeuroImage, 2021)

MK-Curve improves sensitivity to identify white matter alterations in clinical high risk for psychosis. - Fan Zhang 013; Kang Ik Kevin Cho; Yingying Tang; Tianhong Zhang; Sinead Kelly; Maria Di Biase; Lihua Xu; Huijun Li; Keshevan Matcheri; Susan L. Whitfield-Gabrieli; Margaret Niznikiewicz; William S. Stone; et al. (NeuroImage, 2021)

Free water diffusion MRI and executive function with a speed component in healthy aging. - Martin Berger; Lukas Pirpamer; Edith Hofer; Stefan Ropele; Marco Duering; Benno Gesierich; Ofer Pasternak; Christian Enzinger; Reinhold Schmidt; Marisa Koini (NeuroImage, 2022)

Cross-site harmonization of multi-shell diffusion MRI measures based on rotational invariant spherical harmonics (RISH). - Alberto De Luca; Suheyla Cetin Karayumak; Alexander Leemans; Yogesh Rathi; Stephan P. Swinnen; Jolien Gooijers; Amanda Clauwaert; Roald Bahr; Stian Bahr Sandmo; Nir A. Sochen; David Kaufmann; Marc Muehlmann; et al. (NeuroImage, 2022)

EVENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI. - Chenjun Li; Dian Yang; Shun Yao; Shuyue Wang; Ye Wu 001; Le Zhang 001; Qiannuo Li; Kang Ik Kevin Cho; Johanna Seitz-Holland; Lipeng Ning; Jon Haitz Legarreta; Yogesh Rathi; et al. (CoRR, 2024)

DDParcel: Deep Learning Anatomical Brain Parcellation From Diffusion MRI. - Fan Zhang 013; Kang Ik Kevin Cho; Johanna Seitz-Holland; Lipeng Ning; Jon Haitz Legarreta; Yogesh Rathi; Carl-Fredrik Westin; Lauren J. O'Donnell; Ofer Pasternak (IEEE Trans. Medical Imaging, 2024)

Improving Quality Control of MRI Images Using Synthetic Motion Data. - Charles Bricout; Kang Ik Kevin Cho; Michael Harms; Ofer Pasternak; Carrie E. Bearden; Patrick D. McGorry; Rene S. Kahn; JM Kane; B. Nelson; Scott W. Woods; Martha Elizabeth Shenton; Sylvain Bouix; et al. (ISBI, 2025)

DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI. - Chenjun Li; Dian Yang; Shun Yao; Shuyue Wang; Ye Wu 001; Le Zhang 001; Qiannuo Li; Kang Ik Kevin Cho; Johanna Seitz-Holland; Lipeng Ning; Jon Haitz Legarreta; Yogesh Rathi; et al. (Comput. Medical Imaging Graph., 2025)

Improving Quality Control Of MRI Images Using Synthetic Motion Data. - Charles Bricout; Kang Ik Kevin Cho; Michael Harms; Ofer Pasternak; Carrie E. Bearden; Patrick D. McGorry; Rene S. Kahn; John Kane; Barnaby Nelson; Scott W. Woods; Martha Elizabeth Shenton; Sylvain Bouix; et al. (CoRR, 2025)

DDCSR: A Novel End-to-End Deep Learning Framework for Cortical Surface Reconstruction from Diffusion MRI. - Chengjin Li; Yuqian Chen; Nir A. Sochen; Wei Zhang; Carl-Fredrik Westin; Yogesh Rathi; Lauren J. O'Donnell; Ofer Pasternak; Fan Zhang 013 (CoRR, 2025)