MRP supertree construction in the consensus setting. - Olaf R. P. Bininda-Emonds (Bioconsensus, 2001)

Scaling of Accuracy in Extremely Large Phylogenetic Trees. - Olaf R. P. Bininda-Emonds; S. G. Brady; J. Kim; Michael J. Sanderson (Pacific Symposium on Biocomputing, 2001)

From Haeckel to event-pairing: the evolution of developmental sequences. - Olaf R. P. Bininda-Emonds; Jonathan E. Jeffery; Michael I. Coates; Michael K. Richardson (Theory Biosci., 2002)

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences. - Olaf R. P. Bininda-Emonds (BMC Bioinform., 2005)

How Many Bootstrap Replicates Are Necessary? - Nicholas D. Pattengale; Masoud Alipour; Olaf R. P. Bininda-Emonds; Bernard M. E. Moret; Alexandros Stamatakis (J. Comput. Biol., 2010)