General-Purpose Object Recognition in 3D Volume Data Sets Using Gray-Scale Invariants — Classification of Airborne Pollen-Grains Recorded with a Confocal Laser Scanning Microscope. - Olaf Ronneberger; Hans Burkhardt; Eckart Schultz (ICPR (2), 2002)

Self-learning Segmentation and Classification of Cell-Nuclei in 3D Volumetric Data Using Voxel-Wise Gray Scale Invariants. - Janis Fehr; Olaf Ronneberger; Haymo Kurz; Hans Burkhardt (DAGM-Symposium, 2005)

Voxel-Wise Gray Scale Invariants for Simultaneous Segmentation and Classification. - Olaf Ronneberger; Janis Fehr; Hans Burkhardt (DAGM-Symposium, 2005)

Identifikation von Zellen in intaktem Gewebe. - Janis Fehr; Catharina Sauer; Haymo Kurz; Olaf Ronneberger; Hans Burkhardt (Bildverarbeitung für die Medizin, 2006)

Fast Scalar and Vectorial Grayscale Based Invariant Features for 3D Cell Nuclei Localization and Classification. - Janina Schulz; Thorsten Schmidt; Olaf Ronneberger; Hans Burkhardt; Taras Pasternak; Alexander Dovzhenko; Klaus Palme (DAGM-Symposium, 2006)

3D invariants for automated pollen recognition. - Olaf Ronneberger (2007)

Holomorphic Filters for Object Detection. - Marco Reisert; Olaf Ronneberger; Hans Burkhardt (DAGM-Symposium, 2007)

A Fast and Reliable Coin Recognition System. - Marco Reisert; Olaf Ronneberger; Hans Burkhardt (DAGM-Symposium, 2007)

3D Invariants with High Robustness to Local Deformations for Automated Pollen Recognition. - Olaf Ronneberger; Qing Wang 052; Hans Burkhardt (DAGM-Symposium, 2007)

3D-Invarianten zur automatischen Pollenerkennung [3D Invariants for Automated Pollen Recognition]. - Olaf Ronneberger (Ausgezeichnete Informatikdissertationen, 2007)

Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy. - Olaf Ronneberger; Qing Wang 052; Hans Burkhardt (ISBI, 2008)

Increasing the Dimension of Creativity in Rotation Invariant Feature Design Using 3D Tensorial Harmonics. - Henrik Skibbe; Marco Reisert; Olaf Ronneberger; Hans Burkhardt (DAGM-Symposium, 2009)

Using Lateral Coupled Snakes for Modeling the Contours of Worms. - Qing Wang 052; Olaf Ronneberger; Ekkehard Schulze; Ralf Baumeister; Hans Burkhardt (DAGM-Symposium, 2009)

Fast computation of 3D spherical Fourier harmonic descriptors - a complete orthonormal basis for a rotational invariant representation of three-dimensional objects. - Henrik Skibbe; Qing Wang 052; Olaf Ronneberger; Hans Burkhardt; Marco Reisert (ICCV Workshops, 2009)

Image Analysis of Arabidopsis Trichome Patterning in 4D Confocal Datasets. - Robert Bensch; Olaf Ronneberger; Bettina Greese; Christian Fleck 001; Katja Wester; Martin Hülskamp; Hans Burkhardt (ISBI, 2009)

A 3D Active Surface Model for the Accurate Segmentation of Drosophila Schneider Cell Nuclei and Nucleoli. - Margret Keuper; Jan Padeken; Patrick Heun; Hans Burkhardt; Olaf Ronneberger (ISVC (1), 2009)

Rotational Invariance Based on Fourier Analysis in Polar and Spherical Coordinates. - Qing Wang 052; Olaf Ronneberger; Hans Burkhardt (IEEE Trans. Pattern Anal. Mach. Intell., 2009)

Semi-supervised Learning of Edge Filters for Volumetric Image Segmentation. - Margret Keuper; Robert Bensch; Karsten Voigt; Alexander Dovzhenko; Klaus Palme; Hans Burkhardt; Olaf Ronneberger (DAGM-Symposium, 2010)

3D Object Detection Using a Fast Voxel-Wise Local Spherical Fourier Tensor Transformation. - Henrik Skibbe; Marco Reisert; Thorsten Schmidt; Klaus Palme; Olaf Ronneberger; Hans Burkhardt (DAGM-Symposium, 2010)

Mean Shift Gradient Vector Flow: A Robust External Force Field for 3D Active Surfaces. - Margret Keuper; Hans Burkhardt; Olaf Ronneberger; Jan Padeken; Patrick Heun (ICPR, 2010)

3D Deformable Surfaces with Locally Self-Adjusting Parameters - A Robust Method to Determine Cell Nucleus Shapes. - Margret Keuper; Thorsten Schmidt; Jan Padeken; Patrick Heun; Klaus Palme; Hans Burkhardt; Olaf Ronneberger (ICPR, 2010)

Harmonic Filters for 3D Multichannel Data: Rotation Invariant Detection of Mitoses in Colorectal Cancer. - Matthias Schlachter; Marco Reisert; Corinna Herz; Fabienne Schlurmann; Silke Lassmann; Martin Werner 003; Hans Burkhardt; Olaf Ronneberger (IEEE Trans. Medical Imaging, 2010)

3D Rotation-Invariant Description from Tensor Operation on Spherical HOG Field. - Kun Liu 003; Henrik Skibbe; Thorsten Schmidt; Thomas Blein; Klaus Palme; Olaf Ronneberger (BMVC, 2011)

Hierarchical Markov Random Fields for mast cell segmentation in electron microscopic recordings. - Margret Keuper; Thorsten Schmidt; Marta Rodriguez-Franco; Wolfgang Schamel; Thomas Brox; Hans Burkhardt; Olaf Ronneberger (ISBI, 2011)

Alpha helix prediction based on Metropolis-Hastings sampling. - Lingyu Ma; Marco Reisert; Christophe Wirth; Carola Hunte; Olaf Ronneberger; Hans Burkhardt (ISBI, 2011)

Reusable modules for high-content 3D and 4D image analysis. - Olaf Ronneberger (ISBI, 2011)

Spherical Bessel Filter for 3D object detection. - Henrik Skibbe; Marco Reisert; Olaf Ronneberger; Hans Burkhardt (ISBI, 2011)

Spatially-variant Lucy-Richardson deconvolution for multiview fusion of microscopical 3D images. - Maja Temerinac-Ott; Olaf Ronneberger; Roland Nitschke; Wolfgang Driever; Hans Burkhardt (ISBI, 2011)

A comparison of different automated methods for the detection of white matter lesions in MRI data. - Stefan Klöppel; Ahmed Abdulkadir; Stathis Hadjidemetriou; Sabine Issleib; Lars Frings; Thao Nguyen Thanh; Irina Mader; Stefan J. Teipel; Michael Hüll; Olaf Ronneberger (NeuroImage, 2011)

2D/3D rotation-invariant detection using equivariant filters and kernel weighted mapping. - Kun Liu 003; Qing Wang 052; Wolfgang Driever; Olaf Ronneberger (CVPR, 2012)

Modeling of Sparsely Sampled Tubular Surfaces Using Coupled Curves. - Thorsten Schmidt; Margret Keuper; Taras Pasternak; Klaus Palme; Olaf Ronneberger (DAGM/OAGM Symposium, 2012)

Blind deconvolution with PSF regularization for wide-field microscopy. - Margret Keuper; Maja Temerinac-Ott; Jan Padeken; Patrick Heun; Thomas Brox; Hans Burkhardt; Olaf Ronneberger (ISBI, 2012)

Fast Rotation Invariant 3D Feature Computation Utilizing Efficient Local Neighborhood Operators. - Henrik Skibbe; Marco Reisert; Thorsten Schmidt; Thomas Brox; Olaf Ronneberger; Hans Burkhardt (IEEE Trans. Pattern Anal. Mach. Intell., 2012)

Multiview Deblurring for 3-D Images from Light-Sheet-Based Fluorescence Microscopy. - Maja Temerinac-Ott; Olaf Ronneberger; Peter Ochs; Wolfgang Driever; Thomas Brox; Hans Burkhardt (IEEE Trans. Image Process., 2012)

Blind Deconvolution of Widefield Fluorescence Microscopic Data by Regularization of the Optical Transfer Function (OTF). - Margret Keuper; Thorsten Schmidt; Maja Temerinac-Ott; Jan Padeken; Patrick Heun; Olaf Ronneberger; Thomas Brox (CVPR, 2013)

Discriminative Detection and Alignment in Volumetric Data. - Dominic Mai; Philipp Fischer; Thomas Blein; Jasmin Dürr; Klaus Palme; Thomas Brox; Olaf Ronneberger (GCPR, 2013)

Joint 3D cell segmentation and classification in the Arabidopsis root using energy minimization and shape priors. - Kun Liu 003; Thorsten Schmidt; Thomas Blein; Jasmin Dürr; Klaus Palme; Olaf Ronneberger (ISBI, 2013)

Variational attenuation correction of two-view confocal microscopic recordings. - Thorsten Schmidt; Jasmin Dürr; Margret Keuper; Thomas Blein; Klaus Palme; Olaf Ronneberger (ISBI, 2013)

Variational attenuation correction in two-view confocal microscopy. - Thorsten Schmidt; Jasmin Dürr; Margret Keuper; Thomas Blein; Klaus Palme; Olaf Ronneberger (BMC Bioinform., 2013)

Improving Detection of Deformable Objects in Volumetric Data. - Dominic Mai; Olaf Ronneberger (BMVC, 2014)

Accurate Detection in Volumetric Images Using Elastic Registration Based Validation. - Dominic Mai; Jasmin Dürr; Klaus Palme; Olaf Ronneberger (GCPR, 2014)

Optical flow guided cell segmentation and tracking in developing tissue. - Kun Liu 003; Soeren S. Lienkamp; Asako Shindo; John B. Wallingford; Gerd Walz; Olaf Ronneberger (ISBI, 2014)

Reduction of confounding effects with voxel-wise Gaussian process regression in structural MRI. - Ahmed Abdulkadir; Olaf Ronneberger; Sarah J. Tabrizi; Stefan Klöppel (PRNI, 2014)

Rotation-Invariant HOG Descriptors Using Fourier Analysis in Polar and Spherical Coordinates. - Kun Liu 003; Henrik Skibbe; Thorsten Schmidt; Thomas Blein; Klaus Palme; Thomas Brox; Olaf Ronneberger (Int. J. Comput. Vis., 2014)

Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing. - Daniel Kostro; Ahmed Abdulkadir; Alexandra Durr; Raymund Roos; Blair R. Leavitt; Hans J. Johnson; David M. Cash; Sarah J. Tabrizi; Rachael I. Scahill; Olaf Ronneberger; Stefan Klöppel (NeuroImage, 2014)

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. - Robert Bensch; Thomas Brox; Olaf Ronneberger (BMVC, 2015)

Cell segmentation and tracking in phase contrast images using graph cut with asymmetric boundary costs. - Robert Bensch; Olaf Ronneberger (ISBI, 2015)

U-Net: Convolutional Networks for Biomedical Image Segmentation. - Olaf Ronneberger; Philipp Fischer; Thomas Brox (MICCAI (3), 2015)

Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge. - Esther E. Bron; Marion Smits; Wiesje M. van der Flier; Hugo Vrenken; Frederik Barkhof; Philip Scheltens; Janne M. Papma; Rebecca M. E. Steketee; Carolina Méndez Orellana; Rozanna Meijboom; Madalena Pinto; Joana R. Meireles; et al. (NeuroImage, 2015)

3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation. - Özgün Çiçek; Ahmed Abdulkadir; Soeren S. Lienkamp; Thomas Brox; Olaf Ronneberger (MICCAI (2), 2016)

Applying machine learning to automated segmentation of head and neck tumour volumes and organs at risk on radiotherapy planning CT and MRI scans. - Carlton Chu; Jeffrey De Fauw; Nenad Tomasev; Bernardino Romera-Paredes; Cían Hughes; Joseph R. Ledsam; Trevor Back; Hugh Montgomery; Geraint Rees 001; Rosalind Raine; Kevin Sullivan; Syed Ali Moinuddin; et al. (F1000Research, 2016)

Automated analysis of retinal imaging using machine learning techniques for computer vision. - Jeffrey De Fauw; Pearse A. Keane; Nenad Tomasev; Daniel Visentin; George van den Driessche 002; Mike Johnson; Cían Hughes; Carlton Chu; Joseph R. Ledsam; Trevor Back; Tunde Peto; Geraint Rees 001; et al. (F1000Research, 2016)

A benchmark for comparison of dental radiography analysis algorithms. - Ching-Wei Wang; Cheng-Ta Huang; Jia-Hong Lee; Chung-Hsing Li; Sheng-Wei Chang; Ming-Jhih Siao; Tat-Ming Lai; Bulat Ibragimov; Tomaz Vrtovec; Olaf Ronneberger; Philipp Fischer; Timothy F. Cootes; et al. (Medical Image Anal., 2016)

Invited Talk: U-Net Convolutional Networks for Biomedical Image Segmentation. - Olaf Ronneberger (Bildverarbeitung für die Medizin, 2017)

Spatiotemporal Deformable Prototypes for Motion Anomaly Detection. - Robert Bensch; Nico Scherf; Jan Huisken; Thomas Brox; Olaf Ronneberger (Int. J. Comput. Vis., 2017)

Gland segmentation in colon histology images: The glas challenge contest. - Korsuk Sirinukunwattana; Josien P. W. Pluim; Hao Chen 011; Xiaojuan Qi 001; Pheng-Ann Heng; Yun Bo Guo; Li Yang Wang; Bogdan J. Matuszewski; Elia Bruni; Urko Sanchez; Anton Böhm; Olaf Ronneberger; et al. (Medical Image Anal., 2017)

ISOODL: Instance segmentation of overlapping biological objects using deep learning. - Anton Böhm; Annekathrin Ucker; Tim Jager; Olaf Ronneberger; Thorsten Falk (ISBI, 2018)

A Probabilistic U-Net for Segmentation of Ambiguous Images. - Simon Kohl; Bernardino Romera-Paredes; Clemens Meyer; Jeffrey De Fauw; Joseph R. Ledsam; Klaus H. Maier-Hein; S. M. Ali Eslami; Danilo Jimenez Rezende; Olaf Ronneberger (NeurIPS, 2018)

Deep learning to achieve clinically applicable segmentation of head and neck anatomy for radiotherapy. - Stanislav Nikolov; Sam Blackwell; Ruheena Mendes; Jeffrey De Fauw; Clemens Meyer; Cían Hughes; Harry Askham; Bernardino Romera-Paredes; Alan Karthikesalingam; Carlton Chu; Dawn Carnell; Cheng Boon; et al. (CoRR, 2018)

A large annotated medical image dataset for the development and evaluation of segmentation algorithms. - Amber L. Simpson; Michela Antonelli; Spyridon Bakas; Michel Bilello; Keyvan Farahani; Bram van Ginneken; Annette Kopp-Schneider; Bennett A. Landman; Geert Litjens 001; Bjoern H. Menze; Olaf Ronneberger; Ronald M. Summers; et al. (CoRR, 2019)

A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities. - Simon A. A. Kohl; Bernardino Romera-Paredes; Klaus H. Maier-Hein; Danilo Jimenez Rezende; S. M. Ali Eslami; Pushmeet Kohli; Andrew Zisserman; Olaf Ronneberger (CoRR, 2019)

Contrastive Training for Improved Out-of-Distribution Detection. - Jim Winkens; Rudy Bunel; Abhijit Guha Roy; Robert Stanforth; Vivek Natarajan; Joseph R. Ledsam; Patricia MacWilliams; Pushmeet Kohli; Alan Karthikesalingam; Simon Kohl; A. Taylan Cemgil; S. M. Ali Eslami; et al. (CoRR, 2020)

The Medical Segmentation Decathlon. - Michela Antonelli; Annika Reinke; Spyridon Bakas; Keyvan Farahani; Annette Kopp-Schneider; Bennett A. Landman; Geert Litjens 001; Bjoern H. Menze; Olaf Ronneberger; Ronald M. Summers; Bram van Ginneken; Michel Bilello; et al. (CoRR, 2021)

Inferring a Continuous Distribution of Atom Coordinates from Cryo-EM Images using VAEs. - Dan Rosenbaum; Marta Garnelo; Michal Zielinski; Charlie Beattie; Ellen Clancy; Andrea Huber; Pushmeet Kohli; Andrew W. Senior; John Jumper; Carl Doersch; S. M. Ali Eslami; Olaf Ronneberger; et al. (CoRR, 2021)