Biosequence Analysis in PRISM. - Ole Torp Lassen (ICLP, 2008)

Preprocessing for Optimization of Probabilistic-Logic Models for Sequence Analysis. - Henning Christiansen 001; Ole Torp Lassen (ICLP, 2009)

Inference with constrained hidden Markov models in PRISM. - Henning Christiansen 001; Christian Theil Have; Ole Torp Lassen; Matthieu Petit (Theory Pract. Log. Program., 2010)

Taming the Zoo of Discrete HMM Subspecies & Some of their Relatives. - Henning Christiansen 001; Christian Theil Have; Ole Torp Lassen; Matthieu Petit (Biology, Computation and Linguistics, 2011)

Bayesian Annotation Networks for Complex Sequence Analysis. - Henning Christiansen 001; Christian Theil Have; Ole Torp Lassen; Matthieu Petit (ICLP (Technical Communications), 2011)

A Declarative Pipeline Language for Complex Data Analysis. - Henning Christiansen 001; Christian Theil Have; Ole Torp Lassen; Matthieu Petit (LOPSTR, 2012)

The Physics of Text: Ontological Realism in Information Extraction. - Stuart Russell 001; Ole Torp Lassen; Justin Uang; Wei Wang (AKBC@NAACL-HLT, 2016)

Sampling Random Bioinformatics Puzzles using Adaptive Probability Distributions. - Christian Theil Have; Emil Vincent Appel; Jette Bork-Jensen; Ole Torp Lassen (PLP@ILP, 2016)