Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. - Nikolay A. Kolchanov; Oleg V. Vishnevsky; Vladimir N. Babenko; Alexander E. Kel; Ilya N. Shindyalov (ISMB, 1995)

TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. - Alexander E. Kel; O. V. Kel; Oleg V. Vishnevsky; Mikhail P. Ponomarenko; I. V. Ischenko; Holger Karas; Edgar Wingender; Nikolay A. Kolchanov; Heinz Sklenar (German Conference on Bioinformatics - Selected Papers, 1996)

Investigating extended regulatory regions of genomic DNA sequences. - Vladimir N. Babenko; P. S. Kosarev; Oleg V. Vishnevsky; Victor G. Levitsky; V. V. Basin; Anatoly S. Frolov (Bioinform., 1999)

Program "Gene Discovery" for Pattern Matching in Promoter Sequences. - Yuri L. Orlov; Evgenii E. Vityaev 001; Oleg V. Vishnevsky; A. S. Belenok; Boris Kovalerchuk; Mikhail A. Pozdnyakov; Nikolay A. Kolchanov (German Conference on Bioinformatics, 2001)

Computer system "Gene Discovery" for promoter structure analysis. - Evgenii E. Vityaev 001; Yuri L. Orlov; Oleg V. Vishnevsky; Mikhail A. Pozdnyakov; Nikolay A. Kolchanov (Silico Biol., 2002)

ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters. - Oleg V. Vishnevsky; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets. - Oleg V. Vishnevsky; Andrey V. Bocharnikov; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2018)