A Variational Model for Level-set Based Cell Tracking in Time-lapse Fluorescence Microscopy Images. - Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2007)

Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images. - Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2008)

Energy Minimization Methods for Cell Motion Correction and Intracellular Analysis in Live-Cell Fluorescence Microscopy. - Oleh Dzyubachyk; Wiggert A. van Cappellen; Jeroen Essers; Wiro J. Niessen; Erik Meijering (ISBI, 2009)

Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci. - Oleh Dzyubachyk; Jeroen Essers; Wiggert A. van Cappellen; Céline Baldeyron; Akiko Inagaki; Wiro J. Niessen; Erik Meijering (Bioinform., 2010)

Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy. - Oleh Dzyubachyk; Wiggert A. van Cappellen; Jeroen Essers; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2010)

Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy". - Oleh Dzyubachyk; Wiggert A. van Cappellen; Jeroen Essers; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2010)

Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. - Noemí Carranza-Herrezuelo; Ihor Smal; Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2011)

Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. - Artem Khmelinskii; Esben Plenge; Peter Kok; Oleh Dzyubachyk; Dirk H. J. Poot; E. Suidgeest; Charl P. Botha; Wiro J. Niessen; Louise van der Weerd; Erik Meijering; Boudewijn P. F. Lelieveldt (ISBI, 2012)

Joint Intensity Inhomogeneity Correction for Whole-Body MR Data. - Oleh Dzyubachyk; Rob J. van der Geest; Marius Staring; Peter Börnert; Monique Reijnierse; Johan L. Bloem; Boudewijn P. F. Lelieveldt (MICCAI (1), 2013)

Improved Myocardial Scar Characterization by Super-Resolution Reconstruction in Late Gadolinium Enhanced MRI. - Oleh Dzyubachyk; Qian Tao; Dirk H. J. Poot; Hildo J. Lamb; Katja Zeppenfeld; Boudewijn P. F. Lelieveldt; Rob J. van der Geest (MICCAI (3), 2013)

Comparative exploration of whole-body MR through locally rigid transforms. - Oleh Dzyubachyk; Jorik Blaas; Charl P. Botha; Marius Staring; Monique Reijnierse; Johan L. Bloem; Rob J. van der Geest; Boudewijn P. F. Lelieveldt (Int. J. Comput. Assist. Radiol. Surg., 2013)

A benchmark for comparison of cell tracking algorithms. - Martin Maska; Vladimír Ulman; David Svoboda; Pavel Matula; Petr Matula; Cristina Ederra; Ainhoa Urbiola; Tomás España; Subramanian Venkatesan 001; Deepak M. W. Balak; Pavel Karas; Tereza Bolcková; et al. (Bioinform., 2014)

Automated extraction and labelling of the arterial tree from whole-body MRA data. - Rahil Shahzad; Oleh Dzyubachyk; Marius Staring; Joel Kullberg; Lars Johansson; Håkan Ahlström; Boudewijn P. F. Lelieveldt; Rob J. van der Geest (Medical Image Anal., 2015)

Automated Cardiovascular Segmentation in Patients with Congenital Heart Disease from 3D CMR Scans: Combining Multi-atlases and Level-Sets. - Rahil Shahzad; Shan Gao; Qian Tao; Oleh Dzyubachyk; Rob J. van der Geest (RAMBO+HVSMR@MICCAI, 2016)

Computer-aided evaluation of inflammatory changes over time on MRI of the spine in patients with suspected axial spondyloarthritis: a feasibility study. - Evgeni Aizenberg; Rosaline van den Berg; Zineb Ez-Zaitouni; Désirée van der Heijde; Monique Reijnierse; Oleh Dzyubachyk; Boudewijn P. F. Lelieveldt (BMC Medical Imaging, 2017)

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion. - Inge A. Mulder; Artem Khmelinskii; Oleh Dzyubachyk; Sebastiaan de Jong; Nathalie Rieff; Marieke J. H. Wermer; Mathias Hoehn; Boudewijn P. F. Lelieveldt; Arn M. J. M. van den Maagdenberg (Frontiers Neuroinformatics, 2017)

MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion. - Inge A. Mulder; Artem Khmelinskii; Oleh Dzyubachyk; Sebastiaan de Jong; Marieke J. H. Wermer; Mathias Hoehn; Boudewijn P. F. Lelieveldt; Arn M. J. M. van den Maagdenberg (Frontiers Neuroinformatics, 2017)

Fully-automatic left ventricular segmentation from long-axis cardiac cine MR scans. - Rahil Shahzad; Qian Tao; Oleh Dzyubachyk; Marius Staring; Boudewijn P. F. Lelieveldt; Rob J. van der Geest (Medical Image Anal., 2017)

Comparative Analysis of Magnetic Resonance Fingerprinting Dictionaries via Dimensionality Reduction. - Oleh Dzyubachyk; Kirsten Koolstra; Nicola Pezzotti; Boudewijn P. F. Lelieveldt; Andrew G. Webb; Peter Börnert (GLMI@MICCAI, 2019)

Hierarchical stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries. - Kirsten Koolstra; Peter Börnert; Boudewijn P. F. Lelieveldt; Andrew G. Webb; Oleh Dzyubachyk (CoRR, 2019)

Intensity Correction and Standardization for Electron Microscopy Data. - Oleh Dzyubachyk; Roman I Koning; Aat A. Mulder; M. Christina Avramut; Frank G. A. Faas; Abraham J. Koster (MIDL, 2021)

On the ability to exploit signal fluctuations in pseudocontinuous arterial spin labeling for inferring the major flow territories from a traditional perfusion scan. - Thijs W. van Harten; Oleh Dzyubachyk; Reinoud P. H. Bokkers; Marieke J. H. Wermer; Matthias J. P. van Osch (NeuroImage, 2021)

An Analysis of the Impact of Annotation Errors on the Accuracy of Deep Learning for Cell Segmentation. - Serban Vadineanu; Daniël Maria Pelt; Oleh Dzyubachyk; Kees Joost Batenburg (MIDL, 2022)

The Infrared Thermography Toolbox: An Open-access Semi-automated Segmentation Tool for Extracting Skin Temperatures in the Thoracic Region including Supraclavicular Brown Adipose Tissue. - Aashley S. D. Sardjoe Mishre; Maaike E. Straat; Borja Martinez-Tellez; Andrea Mendez Gutierrez; Sander Kooijman; Mariëtte R. Boon; Oleh Dzyubachyk; Andrew Webb; Patrick C. N. Rensen; Hermien E. Kan (J. Medical Syst., 2022)

Intensity Inhomogeneity Correction for Large Panoramic Electron Microscopy Images. - Oleh Dzyubachyk; Abraham J. Koster; Boudewijn P. F. Lelieveldt (MOVI@MICCAI, 2024)

From Feature Maps to Few-Shot Cell Segmentation. - Serban Vadineanu; Daniël Maria Pelt; Oleh Dzyubachyk; Kees Joost Batenburg (MOVI@MICCAI, 2024)

Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations. - Serban Vadineanu; Daniël Maria Pelt; Oleh Dzyubachyk; Kees Joost Batenburg (J. Imaging, 2024)