Prediction of MHC class II binders using the ant colony search strategy. - Oleksiy Karpenko; Jianming Shi; Yang Dai (Artif. Intell. Medicine, 2005)

A Meta-predictor for MHC Class II Binding Peptides Based on Naive Bayesian Approach. - Lei Huang; Oleksiy Karpenko; Naveen Murugan; Yang Dai (EMBC, 2006)

Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. - Feng Tian; Parantu K. Shah; Xiangjun Liu; Nicolas N. Negre; Jia Chen; Oleksiy Karpenko; Kevin P. White; Robert L. Grossman (Bioinform., 2009)

Relational database index choices for genome annotation data. - Oleksiy Karpenko; Yang Dai (BIBM Workshops, 2010)