Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. - Elena Yu. Bragina; Irina A. Goncharova; Anna F. Garaeva; Evgeniy V. Nemerov; Anastasija A. Babovskaya; Andrey B. Karpov; Yulia V. Semenova; Irina Z. Zhalsanova; Densema E. Gomboeva; Olga V. Saik; Olga I. Zolotareva; Vladimir A. Ivanisenko; et al. (J. Integr. Bioinform., 2018)

Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. - Olga V. Saik; Pavel S. Demenkov; Timofey V. Ivanisenko; Elena Yu. Bragina; Maxim B. Freidin; Victor E. Dosenko; Olga I. Zolotareva; Evgeniy L. Choynzonov; Ralf Hofestädt; Vladimir A. Ivanisenko (J. Integr. Bioinform., 2018)

GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. - Alban Shoshi; Ralf Hofestädt; Olga I. Zolotareva; Marcel Friedrichs; Alex Maier; Vladimir A. Ivanisenko; Victor E. Dosenko; Elena Yu. Bragina (J. Integr. Bioinform., 2018)

MOLI: multi-omics late integration with deep neural networks for drug response prediction. - Hossein Sharifi-Noghabi; Olga I. Zolotareva; Colin C. Collins; Martin Ester (Bioinform., 2019)

A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases. - Olga I. Zolotareva; Maren Kleine (J. Integr. Bioinform., 2019)

AITL: Adversarial Inductive Transfer Learning with input and output space adaptation for pharmacogenomics. - Hossein Sharifi-Noghabi; Shuman Peng; Olga I. Zolotareva; Colin C. Collins; Martin Ester (Bioinform., 2020)

Interpretable Drug Response Prediction using a Knowledge-based Neural Network. - Oliver Snow; Hossein Sharifi-Noghabi; Jialin Lu; Olga I. Zolotareva; Mark Lee; Martin Ester (KDD, 2021)

Identification of differentially expressed gene modules in heterogeneous diseases. - Olga I. Zolotareva; Sahand Khakabimamaghani; Olga I Isaeva; Zoe Chervontseva; Alexey Savchik; Martin Ester (Bioinform., 2021)

The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond. - Julian O. Matschinske; Julian Späth; Reza Nasirigerdeh; Reihaneh Torkzadehmahani; Anne Hartebrodt; Balázs Orbán; Sándor Fejér; Olga I. Zolotareva; Mohammad Bakhtiari; Béla Bihari; Marcus D. Bloice; Nina C. Donner; et al. (CoRR, 2021)

Out-of-distribution generalization from labelled and unlabelled gene expression data for drug response prediction. - Hossein Sharifi-Noghabi; Parsa Alamzadeh Harjandi; Olga I. Zolotareva; Colin C. Collins; Martin Ester (Nat. Mach. Intell., 2021)

Identification of Differentially Expressed Gene Modules in Heterogeneous Diseases - Olga I. Zolotareva (2021)

Federated Random Forests can improve local performance of predictive models for various healthcare applications. - Anne-Christin Hauschild; Marta Lemanczyk; Julian O. Matschinske; Tobias Frisch; Olga I. Zolotareva; Andreas Holzinger; Jan Baumbach; Dominik Heider (Bioinform., 2022)

Cancer driver drug interaction explorer. - Michael Hartung; Elisa Anastasi; Zeinab M. Mamdouh; Cristian Nogales; Harald H. H. W. Schmidt; Jan Baumbach; Olga I. Zolotareva; Markus List (Nucleic Acids Res., 2022)

NeDRex-Web: An Interactive Web Tool for Drug Repurposing by Exploring Heterogeneous Molecular Networks. - Andreas Maier 009; Mahdie Rafiei; Elisa Anastasi; Olga I. Zolotareva; James Skelton; Maria L. Elkjaer; Ana I. Casas; Cristian Nogales; Harald H. H. W. Schmidt; Tim Kacprowski; David B. Blumenthal; Anil Wipat; et al. (BIBM, 2024)

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. - Yuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Törne; Teresa Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; et al. (CoRR, 2024)

UnPaSt: unsupervised patient stratification by differentially expressed biclusters in omics data. - Michael Hartung; Andreas Maier 009; Fernando M. Delgado-Chaves; Yuliya Burankova; Olga I. Isaeva; Fábio Malta de Sá Patroni; Daniel He; Casey Shannon; Katharina Kaufmann; Jens Lohmann; Alexey Savchik; Anne Hartebrodt; et al. (CoRR, 2024)

FedRBE - a decentralized privacy-preserving federated batch effect correction tool for omics data based on limma. - Yuliya Burankova; Julian Klemm; Jens Lohmann; Ahmad Taheri; Niklas Probul; Jan Baumbach; Olga I. Zolotareva (CoRR, 2024)

Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE. - Lis Arend; Klaudia Adamowicz; Johannes R. Schmidt; Yuliya Burankova; Olga I. Zolotareva; Olga Tsoy; Josch Konstantin Pauling; Stefan Kalkhof; Jan Baumbach; Markus List; Tanja Laske (Briefings Bioinform., 2025)