The chromatin structure of Dictyostelium discoideum. - Olga Tsoy; Aleksandra A. Galitsyna; Ekaterina Khrameeva; Sergey V. Ulianov; Mikhail S. Gelfand; Sergey V. Razin (BIBM, 2018)

ASimulatoR: splice-aware RNA-Seq data simulation. - Quirin Manz; Olga Tsoy; Amit Fenn; Jan Baumbach; Uwe Völker; Markus List; Tim Kacprowski (Bioinform., 2021)

DIGGER: exploring the functional role of alternative splicing in protein interactions. - Zakaria Louadi; Kevin Yuan; Alexander Greß; Olga Tsoy; Olga V. Kalinina; Jan Baumbach; Tim Kacprowski; Markus List (Nucleic Acids Res., 2021)

Systematic analysis of alternative splicing in time course data using Spycone. - Chit Tong Lio; Gordon Grabert; Zakaria Louadi; Amit Fenn; Jan Baumbach; Tim Kacprowski; Markus List; Olga Tsoy (Bioinform., 2023)

UnPaSt: unsupervised patient stratification by differentially expressed biclusters in omics data. - Michael Hartung; Andreas Maier 009; Fernando M. Delgado-Chaves; Yuliya Burankova; Olga I. Isaeva; Fábio Malta de Sá Patroni; Daniel He; Casey Shannon; Katharina Kaufmann; Jens Lohmann; Alexey Savchik; Anne Hartebrodt; et al. (CoRR, 2024)

Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE. - Lis Arend; Klaudia Adamowicz; Johannes R. Schmidt; Yuliya Burankova; Olga I. Zolotareva; Olga Tsoy; Josch Konstantin Pauling; Stefan Kalkhof; Jan Baumbach; Markus List; Tanja Laske (Briefings Bioinform., 2025)