The channel in transporters is formed by residues that are rare in transmembrane helices. - Olga V. Kalinina; Vsevolod J. Makeev; Roman A. Sutormin; Mikhail S. Gelfand; Aleksandra B. Rakhmaninova (Silico Biol., 2003)

SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. - Olga V. Kalinina; Pavel S. Novichkov; Andrey A. Mironov; Mikhail S. Gelfand; Aleksandra B. Rakhmaninova (Nucleic Acids Res., 2004)

Combining specificity determining and conserved residues improves functional site prediction. - Olga V. Kalinina; Mikhail S. Gelfand; Robert B. Russell (BMC Bioinform., 2009)

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. - Pavel V. Mazin; Mikhail S. Gelfand; Andrey A. Mironov; Aleksandra B. Rakhmaninova; Anatoly R. Rubinov; Robert B. Russell; Olga V. Kalinina (Algorithms Mol. Biol., 2010)

Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs. - Olga V. Kalinina; Oliver Wichmann; Gordana Apic; Robert B. Russell (PLoS Comput. Biol., 2011)

ProtChemSI: a network of protein-chemical structural interactions. - Olga V. Kalinina; Oliver Wichmann; Gordana Apic; Robert B. Russell (Nucleic Acids Res., 2012)

Entropy gain due to water release upon ligand binding. - Mazen Ahmad; Olga V. Kalinina; Thomas Lengauer (J. Cheminformatics, 2014)

BALL-SNPgp - from genetic variants toward computational diagnostics. - Sabine C. Mueller; Christina Backes; Alexander Greß; Nina Baumgarten; Olga V. Kalinina; Andreas Moll; Oliver Kohlbacher; Eckart Meese; Andreas Keller (Bioinform., 2016)

Patterns of amino acid conservation in human and animal immunodeficiency viruses. - Olga S. Voitenko; Andi Dhroso; Anna Feldmann 001; Dmitry Korkin; Olga V. Kalinina (Bioinform., 2016)

StructMAn: annotation of single-nucleotide polymorphisms in the structural context. - Alexander Greß; Vasily Ramensky; Joachim Büch; Andreas Keller; Olga V. Kalinina (Nucleic Acids Res., 2016)

SphereCon - a method for precise estimation of residue relative solvent accessible area from limited structural information. - Alexander Greß; Olga V. Kalinina (Bioinform., 2020)

DIGGER: exploring the functional role of alternative splicing in protein interactions. - Zakaria Louadi; Kevin Yuan; Alexander Greß; Olga Tsoy; Olga V. Kalinina; Jan Baumbach; Tim Kacprowski; Markus List (Nucleic Acids Res., 2021)

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. - Andrey A. Mironov; Stepan Denisov; Alexander Greß; Olga V. Kalinina; Dmitri D. Pervouchine (PLoS Comput. Biol., 2021)

Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane. - Carla F. Sousa; Mohamed A. M. Kamal; Robert Richter; Kalanika Elamaldeniya; Rolf W. Hartmann; Martin Empting; Claus-Michael Lehr; Olga V. Kalinina (J. Chem. Inf. Model., 2022)

Phylogenetic inference of changes in amino acid propensities with single-position resolution. - Galya V. Klink; Olga V. Kalinina; Georgii A. Bazykin (PLoS Comput. Biol., 2022)

MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants. - Sanjay Kumar Srikakulam; Sebastian Keller; Fawaz Dabbaghie; Robert Bals; Olga V. Kalinina (Bioinform., 2023)

GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES. - Roman Joeres; Daniel Bojar; Olga V. Kalinina (J. Cheminformatics, 2023)