Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy. - Olgun Guvench; Jörg Weiser; Peter S. Shenkin; István Kolossváry; W. Clark Still (J. Comput. Chem., 2002)

Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations. - Olgun Guvench; Charles L. Brooks III (J. Comput. Chem., 2004)

Enhanced password authentication through keystroke typing characteristics. - Olgun Guvench; Selim Akyokus; Mitat Uysal; Aykut Güven (Artificial Intelligence and Applications, 2007)

Additive empirical force field for hexopyranose monosaccharides. - Olgun Guvench; Shannon N. Greene; Ganesh Kamath; John W. Brady; Richard M. Venable; Richard W. Pastor; Alexander D. MacKerell Jr. (J. Comput. Chem., 2008)

Computational Fragment-Based Binding Site Identification by Ligand Competitive Saturation. - Olgun Guvench; Alexander D. MacKerell Jr. (PLoS Comput. Biol., 2009)

CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields. - Kenno Vanommeslaeghe; Elizabeth Hatcher; Chayan Acharya; Sibsankar Kundu; Shijun Zhong; Jihyun Shim; Eva Darian; Olgun Guvench; Pedro E. M. Lopes; Igor Vorobyov; Alexander D. MacKerell Jr. (J. Comput. Chem., 2010)

Reproducing Crystal Binding Modes of Ligand Functional Groups Using Site-Identification by Ligand Competitive Saturation (SILCS) Simulations. - E. Prabhu Raman; Wenbo Yu 002; Olgun Guvench; Alexander D. MacKerell Jr. (J. Chem. Inf. Model., 2011)

Balancing target flexibility and target denaturation in computational fragment-based inhibitor discovery. - Theresa J. Foster; Alexander D. MacKerell Jr.; Olgun Guvench (J. Comput. Chem., 2012)

New atomic resolution insights into dynamic protein-carbohydrate interactions enabled by high-performance computing. - Olgun Guvench (XSEDE, 2013)

Rigidity and flexibility in the tetrasaccharide linker of proteoglycans from atomic-resolution molecular simulation. - Cathy Ng; Padmavathy Nandha Premnath; Olgun Guvench (J. Comput. Chem., 2017)

On the Use of PDB X-Ray Crystal Structures as Force Field Target and Validation Data for Pyranose Ring Puckering. - Olgun Guvench; Andrew L. Straffin (J. Comput. Chem., 2025)