MetaPath Online: a web server implementation of the network expansion algorithm. - Thomas Handorf; Oliver Ebenhöh (Nucleic Acids Res., 2007)

Hardness and Approximability of the Inverse Scope Problem. - Zoran Nikoloski; Sergio Grimbs; Joachim Selbig; Oliver Ebenhöh (WABI, 2008)

Biosynthetic Potentials of Metabolites and Their Hierarchical Organization. - Franziska Matthäus; Carlos Salazar; Oliver Ebenhöh (PLoS Comput. Biol., 2008)

Functional Classification of Genome-Scale Metabolic Networks. - Oliver Ebenhöh; Thomas Handorf (EURASIP J. Bioinform. Syst. Biol., 2009)

Mass-balanced randomization of metabolic networks. - Georg Basler; Oliver Ebenhöh; Joachim Selbig; Zoran Nikoloski (Bioinform., 2011)

A minimal mathematical model of nonphotochemical quenching of chlorophyll fluorescence. - Oliver Ebenhöh; Torsten Houwaart; Heiko Lokstein; Stephanie Schlede; Katrin Tirok (Biosyst., 2011)

Thermodynamic Limits and Optimality of Microbial Growth. - Nima P. Saadat; Tim Nies; Yvan Rousset; Oliver Ebenhöh (Entropy, 2020)

Constructing and analysing dynamic models with modelbase v1.2.3: a software update. - Marvin van Aalst; Oliver Ebenhöh; Anna Matuszynska (BMC Bioinform., 2021)

COBREXA.jl: constraint-based reconstruction and exascale analysis. - Miroslav Kratochvíl; Laurent Heirendt; St. Elmo Wilken; Taneli Pusa; Sylvain Arreckx; Alberto Noronha; Marvin van Aalst; Venkata P. Satagopam; Oliver Ebenhöh; Reinhard Schneider 002; Christophe Trefois; Wei Gu (Bioinform., 2022)

Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth. - Hugo Dourado; Wolfram Liebermeister; Oliver Ebenhöh; Martin J. Lercher (PLoS Comput. Biol., 2023)

Stochastic modelling of a three-dimensional glycogen granule synthesis and impact of the branching enzyme. - Yvan Rousset; Oliver Ebenhöh; Adélaïde Raguin (PLoS Comput. Biol., 2023)

What controls carbon sequestration in plants under which conditions? - Tim Nies; Marvin van Aalst; Nima P. Saadat; Josha Ebeling; Oliver Ebenhöh (Biosyst., 2023)

Shedding light on blue-green photosynthesis: A wavelength-dependent mathematical model of photosynthesis in Synechocystis sp. PCC 6803. - Tobias Pfennig; Elena Kullmann; Tomás Zavrel; Andreas Nakielski; Oliver Ebenhöh; Jan Cervený; Gábor Bernát; Anna Matuszynska (PLoS Comput. Biol., 2024)