CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting. - Henry R. Bigelow; Adam S. Wenick; Allan Wong; Oliver Hobert (BMC Bioinform., 2004)

Whole-animal connectomes of both Caenorhabditis elegans sexes. - Steven J. Cook; Travis A. Jarrell; Christopher A. Brittin; Yi Wang; Adam E. Bloniarz; Maksim A. Yakovlev; Ken C. Q. Nguyen; Leo T.-H. Tang; Emily A. Bayer; Janet S. Duerr; Hannes E. Bülow; Oliver Hobert; et al. (Nat., 2019)

Probabilistic Joint Segmentation and Labeling of C. elegans Neurons. - Amin Nejatbakhsh; Erdem Varol; Eviatar Yemini; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)

Demixing Calcium Imaging Data in C. elegans via Deformable Non-negative Matrix Factorization. - Amin Nejatbakhsh; Erdem Varol; Eviatar Yemini; Vivek Venkatachalam; Albert Lin; Aravinthan D. T. Samuel; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)

Statistical Atlas of C. elegans Neurons. - Erdem Varol; Amin Nejatbakhsh; Ruoxi Sun 006; Gonzalo E. Mena; Eviatar Yemini; Oliver Hobert; Liam Paninski (MICCAI (5), 2020)